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Os12g0556400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.11 (0.0237) R2 : 0.0068
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.088 (0.0498) R2dN8 : 0.00878 R2N8 : 0.0068
σ : 0.445
deviance : 91.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.69 0.366 8.13 -0.138 0.56 0.871 1.13 1.44 -0.0902 20.1 6.653 9 -- --
63.96 0.372 8.13 -0.097 0.546 0.757 0.645 -- -0.083 19.4 5.875 7 -- --
63.59 0.371 8.13 -0.134 0.53 0.802 -- 0.858 -0.078 19.6 7.274 8 -- --
65.07 0.376 8.12 -0.112 0.555 0.756 -- -- -0.0796 19.5 5.253 7 -- --
78.03 0.411 8.11 -0.158 -- 0.656 -- 0.976 -0.098 -- 14.61 8 -- --
73.32 0.401 8.12 -0.109 0.552 -- 0.646 -- -0.0911 17 -- -- -- --
74.37 0.404 8.12 -0.107 0.556 -- -- -- -0.0878 16.9 -- -- -- --
79.78 0.416 8.11 -0.132 -- 0.613 -- -- -0.102 -- 11.44 15 -- --
65.39 0.377 8.12 -- 0.554 0.773 -- -- -0.0696 19.6 5.23 7 -- --
90.64 0.445 8.11 -0.128 -- -- -- -- -0.102 -- -- -- -- --
74.67 0.404 8.12 -- 0.557 -- -- -- -0.0759 16.9 -- -- -- --
79.68 0.416 8.11 -- -- 0.616 -- -- -0.111 -- 10.66 127 -- --
91.07 0.445 8.11 -- -- -- -- -- -0.088 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.94 radiation 40.0 10 < th dose independent rect. 4 16
2 56.41 radiation 40.0 90 < th dose independent rect. 3 16
12 58.04 radiation 1.0 10 > th dose dependent rect. 9 5
13 58.04 temperature 10.0 90 > th dose dependent rect. 8 6
14 58.05 radiation 1.0 10 > th dose dependent rect. 8 8
15 58.06 temperature 10.0 10 > th dose dependent rect. 9 5
19 58.15 temperature 15.0 270 > th dose independent rect. 13 17
21 58.25 atmosphere 995.0 270 > th dose independent rect. 2 15
23 58.27 temperature 15.0 10 > th dose independent rect. 14 19
24 58.28 humidity 50.0 270 > th dose independent rect. 6 7
28 58.31 atmosphere 995.0 270 > th dose independent rect. 13 17
29 58.32 precipitation 0.1 270 < th dose independent rect. 2 15
32 58.32 precipitation 0.1 270 < th dose dependent rect. 2 15
33 58.37 radiation 40.0 90 < th dose dependent rect. 3 16
34 58.40 temperature 15.0 270 > th dose independent rect. 2 15
63 58.49 radiation 10.0 270 < th dose independent rect. 17 9
64 58.51 humidity 50.0 270 > th dose independent rect. 17 9
65 58.51 temperature 10.0 270 > th dose dependent rect. 6 7
71 58.57 radiation 40.0 10 < th dose independent rect. 12 21
74 58.61 radiation 30.0 90 < th dose independent rect. 3 6
81 58.62 radiation 20.0 270 < th dose dependent rect. 17 9
82 58.64 radiation 1.0 90 > th dose dependent rect. 8 6
86 58.68 atmosphere 995.0 10 > th dose independent rect. 14 19
89 58.69 temperature 10.0 270 > th dose dependent rect. 9 1
91 58.73 wind 9.0 270 < th dose independent rect. 17 9
92 58.73 precipitation 0.1 270 < th dose independent rect. 13 17
93 58.73 precipitation 0.1 270 < th dose dependent rect. 13 17
97 58.76 wind 5.0 90 < th dose independent rect. 3 5
100 58.77 radiation 40.0 90 < th dose independent rect. 13 19
105 58.80 wind 9.0 90 < th dose dependent rect. 3 5
109 58.86 temperature 10.0 270 > th dose independent rect. 17 9
114 58.86 atmosphere 1015.0 270 < th dose independent rect. 2 15
119 58.90 precipitation 0.1 90 < th dose independent rect. 8 7
121 58.90 precipitation 0.1 90 < th dose dependent rect. 8 7
126 58.92 wind 5.0 270 < th dose independent rect. 1 6
128 58.94 temperature 10.0 270 > th dose independent rect. 6 7
129 58.94 atmosphere 995.0 270 > th dose independent rect. 6 7
130 58.94 atmosphere 1015.0 270 < th dose independent rect. 6 7
136 58.97 wind 9.0 270 < th dose independent rect. 6 7
137 58.97 precipitation 0.1 270 < th dose independent rect. 6 7
138 58.97 precipitation 0.1 270 < th dose dependent rect. 6 7
146 59.02 radiation 10.0 10 > th dose independent rect. 9 5
151 59.05 precipitation 0.1 90 < th dose independent rect. 3 5
154 59.05 precipitation 0.1 90 < th dose dependent rect. 3 5
155 59.06 temperature 30.0 90 < th dose independent rect. 3 6
162 59.10 temperature 10.0 90 > th dose independent rect. 8 6
163 59.10 atmosphere 995.0 90 > th dose independent rect. 8 6
164 59.10 atmosphere 1015.0 90 < th dose independent rect. 8 6
172 59.11 temperature 10.0 90 > th dose dependent rect. 3 5
175 59.14 temperature 10.0 10 > th dose independent rect. 9 5
177 59.14 atmosphere 995.0 10 > th dose independent rect. 9 5
178 59.14 atmosphere 1015.0 10 < th dose independent rect. 9 5
179 59.14 precipitation 0.1 10 < th dose independent rect. 9 5
181 59.14 precipitation 0.1 10 < th dose dependent rect. 9 5
190 59.20 precipitation 0.1 270 < th dose independent rect. 1 6
191 59.20 precipitation 0.1 270 < th dose dependent rect. 1 6
205 59.25 humidity 50.0 270 > th dose independent rect. 9 1
213 59.28 wind 9.0 270 < th dose independent rect. 2 15
219 59.32 wind 9.0 270 < th dose independent rect. 13 17
222 59.33 wind 9.0 90 < th dose independent rect. 8 6
234 59.36 temperature 10.0 90 > th dose independent rect. 3 5
237 59.36 humidity 50.0 90 > th dose independent rect. 3 5
239 59.36 atmosphere 995.0 90 > th dose independent rect. 3 5
240 59.36 atmosphere 1015.0 90 < th dose independent rect. 3 5
243 59.36 temperature 10.0 90 > th dose independent rect. 8 19
245 59.37 wind 9.0 90 < th dose independent rect. 8 19
246 59.37 temperature 15.0 270 > th dose independent rect. 10 23
269 59.43 precipitation 0.1 270 < th dose independent rect. 3 2
270 59.43 wind 1.0 30 > th dose independent rect. 9 5
272 59.43 precipitation 0.1 270 < th dose dependent rect. 3 2
273 59.43 wind 9.0 270 < th dose dependent rect. 1 6
288 59.45 precipitation 0.1 10 < th dose independent rect. 14 19
289 59.45 precipitation 0.1 10 < th dose dependent rect. 14 19
290 59.46 wind 5.0 270 < th dose independent rect. 3 2
291 59.47 wind 9.0 10 < th dose independent rect. 9 5
294 59.47 wind 9.0 10 < th dose independent rect. 14 19
297 59.48 temperature 10.0 1440 > th dose independent rect. 10 5
303 59.48 temperature 10.0 1440 > th dose independent rect. 15 19
306 59.49 temperature 10.0 270 > th dose dependent rect. 8 3
309 59.50 humidity 50.0 270 > th dose independent rect. 6 21
313 59.51 radiation 20.0 270 < th dose independent rect. 1 7
318 59.53 atmosphere 1000.0 270 > th dose independent rect. 12 7
323 59.54 temperature 10.0 270 > th dose independent rect. 9 1
324 59.54 atmosphere 995.0 270 > th dose independent rect. 9 1
325 59.54 atmosphere 1015.0 270 < th dose independent rect. 9 1
328 59.54 wind 9.0 270 < th dose dependent rect. 3 2
330 59.55 wind 1.0 270 > th dose independent rect. 9 1
331 59.55 precipitation 0.1 270 < th dose independent rect. 17 9
333 59.55 precipitation 0.1 270 < th dose dependent rect. 17 9
344 59.59 wind 9.0 270 < th dose independent rect. 9 1
351 59.61 precipitation 0.1 270 < th dose independent rect. 9 1
353 59.61 precipitation 0.1 270 < th dose dependent rect. 9 1
365 59.63 wind 9.0 10 < th dose dependent rect. 4 5
366 59.63 radiation 30.0 270 < th dose dependent rect. 1 7
371 59.65 temperature 10.0 270 > th dose independent rect. 1 6
373 59.65 temperature 30.0 270 < th dose independent rect. 1 6
374 59.65 humidity 50.0 270 > th dose independent rect. 1 6
377 59.65 atmosphere 995.0 270 > th dose independent rect. 1 6
378 59.65 atmosphere 1015.0 270 < th dose independent rect. 1 6
383 59.65 radiation 1.0 90 < th dose dependent sin 13 NA
391 59.67 temperature 30.0 270 < th dose independent rect. 18 8
395 59.68 humidity 50.0 270 > th dose independent rect. 7 18
428 59.72 precipitation 0.1 90 < th dose independent rect. 8 19
430 59.72 precipitation 0.1 90 < th dose dependent rect. 8 19
447 59.77 temperature 10.0 10 > th dose dependent rect. 3 6
450 59.78 radiation 30.0 90 < th dose independent rect. 3 8
471 59.84 wind 9.0 270 < th dose independent rect. 5 22
502 59.90 radiation 1.0 270 < th dose dependent rect. 5 21
505 59.91 radiation 40.0 10 < th dose dependent sin 1 NA
523 59.96 humidity 50.0 270 > th dose independent rect. 8 3
527 59.96 radiation 1.0 10 > th dose dependent sin 0 NA
587 60.02 radiation 1.0 270 > th dose independent rect. 6 7
595 60.03 atmosphere 995.0 270 > th dose independent rect. 18 8
596 60.03 humidity 50.0 270 > th dose independent rect. 19 17
600 60.04 radiation 1.0 90 > th dose independent sin 13 NA
601 60.04 humidity 90.0 10 < th dose independent rect. 9 5
619 60.06 precipitation 0.1 90 < th dose independent rect. 19 8
620 60.06 precipitation 0.1 90 < th dose dependent rect. 19 8
632 60.08 temperature 10.0 270 > th dose independent rect. 3 2
634 60.08 temperature 30.0 270 < th dose independent rect. 3 2
635 60.08 humidity 50.0 270 > th dose independent rect. 3 2
638 60.08 atmosphere 995.0 270 > th dose independent rect. 3 2
639 60.08 atmosphere 1010.0 270 < th dose independent rect. 3 2
641 60.08 radiation 20.0 270 < th dose independent rect. 3 2
645 60.08 temperature 10.0 270 > th dose independent rect. 5 22
664 60.10 humidity 50.0 270 > th dose dependent rect. 3 2
665 60.10 radiation 30.0 270 < th dose dependent rect. 3 2
667 60.11 wind 5.0 10 < th dose independent rect. 4 5
669 60.11 precipitation 0.1 10 < th dose independent rect. 3 6
674 60.11 precipitation 0.1 10 < th dose dependent rect. 3 6
699 60.13 radiation 1.0 270 < th dose independent rect. 3 2
707 60.14 radiation 1.0 90 > th dose independent rect. 14 18
709 60.14 radiation 40.0 10 < th dose dependent rect. 12 21
742 60.19 temperature 10.0 270 > th dose dependent rect. 3 3
760 60.20 precipitation 0.1 270 < th dose independent rect. 11 21
763 60.20 precipitation 0.1 270 < th dose dependent rect. 11 21
781 60.22 temperature 10.0 10 > th dose independent rect. 4 5
783 60.22 temperature 30.0 10 < th dose independent rect. 4 5
784 60.22 humidity 50.0 10 > th dose independent rect. 4 5
786 60.22 atmosphere 995.0 10 > th dose independent rect. 4 5
787 60.22 atmosphere 1015.0 10 < th dose independent rect. 4 5
791 60.22 temperature 10.0 10 > th dose independent rect. 9 19
797 60.23 humidity 90.0 90 < th dose independent rect. 8 7
801 60.24 radiation 1.0 270 > th dose independent rect. 9 1
836 60.26 humidity 50.0 90 > th dose dependent rect. 3 6
852 60.28 atmosphere 1000.0 10 > th dose independent rect. 4 16
860 60.29 wind 9.0 10 < th dose independent rect. 9 19
863 60.30 radiation 1.0 270 < th dose dependent rect. 8 18
869 60.31 wind 9.0 270 < th dose dependent rect. 7 6
889 60.35 precipitation 0.1 10 < th dose independent rect. 9 18
891 60.35 atmosphere 1015.0 10 < th dose independent rect. 14 19
892 60.35 humidity 50.0 270 > th dose dependent rect. 1 6
895 60.35 precipitation 0.1 10 < th dose dependent rect. 9 18
901 60.36 humidity 50.0 10 > th dose independent rect. 9 19
975 60.41 radiation 1.0 270 > th dose dependent rect. 9 1
981 60.42 atmosphere 995.0 270 > th dose dependent rect. 12 7