BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0556400 Os12g0556400|AK108690
         (111 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16000.1  | chr1:5494576-5495149 FORWARD LENGTH=87              84   1e-17
AT1G80890.1  | chr1:30397211-30397875 FORWARD LENGTH=81            72   5e-14

>AT1G16000.1 | chr1:5494576-5495149 FORWARD LENGTH=87
          Length = 86

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 45/61 (73%)

Query: 43  FRARVEHYLYSGEKKHXXXXXXXXXXXXXXPWYLMTRGAKHQSHQDYMERANKARSERLS 102
           FRA++EHY+YSGEKKH              PWYLMT+G+KHQSHQDYM++A+KAR  RLS
Sbjct: 20  FRAKMEHYVYSGEKKHVLVGIGIVTIIFGVPWYLMTQGSKHQSHQDYMDKADKARKARLS 79

Query: 103 S 103
           S
Sbjct: 80  S 80



>AT1G80890.1 | chr1:30397211-30397875 FORWARD LENGTH=81
          Length = 80

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 43  FRARVEHYLYSGEKKHXXXXXXXXXXXXXXPWYLMTRGAKHQSHQDYMERANKARSERL 101
            RA++EHY+YSGEKKH              PWYLM +G+KH+SHQDY+E+A+KAR  RL
Sbjct: 14  IRAKMEHYVYSGEKKHVLAGIGIISIIFGIPWYLMNQGSKHRSHQDYLEKADKARKARL 72



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.126    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,755,843
Number of extensions: 42504
Number of successful extensions: 79
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 111
Length of database: 11,106,569
Length adjustment: 80
Effective length of query: 31
Effective length of database: 8,913,289
Effective search space: 276311959
Effective search space used: 276311959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)