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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0548700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MPI.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.86 (0.0898) R2 : 0.129
β1 : -4 (0.518) R2dD : 0.508 R2D : -0.301
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.48 (0.265) R2dE : 0.0883 R2E : -0.099
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.85 (1.62) R2dD*E : 0.302 R2D*E : -0.327
γ1 : -0.727 (0.196) R2dN8 : 0.0639 R2N8 : -0.105
σ : 1.27
deviance : 749.29
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.28
memory length : 3650
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
744.35 1.28 3.86 -4.02 0.294 1.44 0.255 -9.92 -0.734 3.78 26.3 3629 -- --
775.51 1.3 3.63 -3.48 0.271 2.49 -0.477 -- -0.562 2.66 16.4 47520 -- --
744.54 1.27 3.86 -4.01 0.296 1.44 -- -9.89 -0.734 3.83 26.3 3628 -- --
773.2 1.3 3.63 -3.1 0.348 2.16 -- -- -0.462 2.05 15.5 47520 -- --
749.29 1.27 3.86 -4 -- 1.48 -- -9.85 -0.727 -- 26.28 3650 -- --
819.06 1.34 3.48 -1.03 0.36 -- -0.101 -- 0.159 2.01 -- -- -- --
819.09 1.34 3.48 -1.02 0.36 -- -- -- 0.16 2.07 -- -- -- --
780.06 1.3 3.62 -3.03 -- 2.12 -- -- -0.43 -- 15.51 47520 -- --
846.56 1.36 3.46 -- 0.342 0.0655 -- -- 0.25 1.84 14 47520 -- --
826.87 1.34 3.48 -1.01 -- -- -- -- 0.168 -- -- -- -- --
846.64 1.36 3.46 -- 0.341 -- -- -- 0.273 2.01 -- -- -- --
813.36 1.33 3.46 -- -- -0.858 -- -- 0.28 -- 34.91 47520 -- --
853.63 1.36 3.46 -- -- -- -- -- 0.28 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 741.08 humidity 80.0 43200 < th dose independent rect. 11 4
2 741.16 humidity 80.0 43200 > th dose independent rect. 11 4
8 741.87 humidity 90.0 43200 > th dose independent rect. 22 1
31 743.68 humidity 70.0 43200 > th dose dependent rect. 12 3
40 744.47 humidity 90.0 43200 > th dose dependent rect. 7 20
41 744.47 humidity 90.0 43200 > th dose dependent rect. 2 21
43 744.56 humidity 90.0 43200 > th dose dependent rect. 8 18
61 744.90 humidity 90.0 43200 > th dose dependent rect. 2 17
77 745.15 humidity 90.0 43200 > th dose independent rect. 8 17
80 745.22 humidity 90.0 43200 > th dose dependent rect. 22 1
83 745.24 humidity 90.0 43200 > th dose dependent sin 3 NA
93 745.34 humidity 90.0 43200 > th dose independent rect. 20 3
117 745.67 humidity 90.0 43200 > th dose independent rect. 2 21
125 745.72 humidity 90.0 43200 > th dose dependent sin 18 NA
135 745.80 humidity 90.0 43200 > th dose dependent no NA NA
136 745.80 radiation 1.0 43200 < th dose dependent rect. 18 2
137 745.81 radiation 1.0 43200 < th dose dependent rect. 18 4
138 745.81 radiation 1.0 43200 < th dose dependent rect. 18 7
141 745.82 radiation 1.0 43200 < th dose dependent rect. 18 9
142 745.83 precipitation 0.1 43200 < th dose independent rect. 4 1
144 745.83 precipitation 0.1 43200 < th dose dependent rect. 4 1
152 745.86 humidity 90.0 43200 > th dose dependent rect. 15 23
153 745.88 humidity 90.0 43200 > th dose dependent rect. 20 23
154 745.89 humidity 90.0 43200 > th dose independent rect. 18 5
171 746.04 temperature 25.0 43200 > th dose independent rect. 10 1
178 746.10 humidity 90.0 43200 < th dose independent rect. 22 1
204 746.28 temperature 25.0 43200 < th dose independent rect. 10 1
208 746.30 precipitation 0.1 43200 > th dose independent rect. 4 1
211 746.30 humidity 90.0 43200 > th dose dependent rect. 10 23
212 746.31 humidity 90.0 43200 > th dose independent sin 18 NA
230 746.47 humidity 90.0 43200 > th dose independent rect. 12 12
232 746.48 humidity 90.0 43200 < th dose independent rect. 8 17
267 746.80 humidity 90.0 43200 > th dose independent rect. 15 9
291 746.92 temperature 25.0 720 > th dose dependent rect. 18 15
294 746.94 radiation 1.0 43200 < th dose dependent rect. 18 13
313 747.11 temperature 25.0 43200 > th dose independent rect. 8 5
317 747.15 temperature 25.0 43200 < th dose independent rect. 9 3
322 747.18 precipitation 0.1 43200 > th dose dependent rect. 4 1
328 747.23 temperature 25.0 43200 < th dose independent rect. 7 6
343 747.31 radiation 1.0 43200 > th dose independent rect. 18 1
369 747.46 humidity 90.0 43200 > th dose dependent rect. 13 11
378 747.57 humidity 90.0 43200 > th dose dependent rect. 18 6
380 747.59 temperature 20.0 43200 < th dose independent rect. 4 1
390 747.62 temperature 20.0 43200 > th dose independent rect. 4 1
393 747.63 humidity 90.0 43200 < th dose independent sin 18 NA
410 747.77 temperature 25.0 43200 < th dose independent rect. 17 1
437 747.86 temperature 25.0 43200 > th dose independent rect. 17 1
438 747.87 precipitation 0.1 43200 < th dose independent rect. 8 2
440 747.87 precipitation 0.1 43200 < th dose dependent rect. 8 2
456 747.98 precipitation 0.1 43200 > th dose independent rect. 8 2
458 747.98 precipitation 0.1 43200 > th dose dependent rect. 8 2
465 748.01 humidity 90.0 43200 > th dose independent rect. 15 23
468 748.02 humidity 90.0 43200 < th dose independent rect. 18 1
469 748.02 humidity 90.0 43200 < th dose independent rect. 17 6
472 748.03 temperature 25.0 43200 > th dose independent rect. 7 13
473 748.05 humidity 90.0 43200 > th dose independent no NA NA
479 748.09 humidity 90.0 43200 > th dose independent sin 3 NA
480 748.09 temperature 25.0 43200 < th dose independent rect. 7 13
481 748.09 humidity 90.0 43200 > th dose independent rect. 2 17
484 748.10 humidity 90.0 43200 > th dose independent rect. 2 15
491 748.13 humidity 90.0 43200 > th dose independent rect. 20 23
506 748.19 humidity 90.0 43200 < th dose independent rect. 14 9
507 748.19 temperature 25.0 43200 > th dose independent rect. 10 12
531 748.25 temperature 25.0 43200 > th dose independent sin 0 NA
540 748.27 humidity 90.0 43200 < th dose independent rect. 12 12
561 748.31 humidity 90.0 43200 > th dose independent rect. 22 23
565 748.33 temperature 25.0 43200 < th dose independent rect. 10 13
578 748.36 temperature 25.0 43200 < th dose independent sin 0 NA
654 748.54 radiation 1.0 43200 < th dose dependent rect. 18 20
733 748.75 radiation 1.0 43200 < th dose dependent sin 13 NA
746 748.80 radiation 1.0 43200 < th dose dependent rect. 12 18
760 748.84 temperature 25.0 43200 < th dose independent rect. 16 3
768 748.85 humidity 90.0 43200 < th dose independent rect. 2 21
795 748.93 temperature 25.0 43200 < th dose independent rect. 15 5
820 749.00 temperature 25.0 43200 > th dose independent rect. 14 6
847 749.06 temperature 25.0 43200 > th dose independent rect. 16 3
869 749.08 humidity 90.0 43200 > th dose independent rect. 11 23
917 749.19 temperature 20.0 43200 > th dose dependent rect. 7 2
931 749.21 temperature 20.0 43200 > th dose dependent rect. 19 3
932 749.21 radiation 1.0 43200 < th dose dependent rect. 4 3
933 749.21 radiation 1.0 43200 < th dose dependent rect. 2 5
973 749.28 temperature 20.0 43200 > th dose dependent rect. 17 6