Os12g0540700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0540700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.49 | 0.368 | 10.7 | -0.546 | 0.129 | 1.28 | 0.0862 | 1.09 | -0.53 | 13 | 23 | 832 | -- | -- |
| 62.77 | 0.369 | 10.7 | -0.415 | 0.14 | 1.1 | 0.313 | -- | -0.507 | 12 | 23.01 | 832 | -- | -- |
| 61.51 | 0.365 | 10.7 | -0.551 | 0.13 | 1.29 | -- | 1.15 | -0.532 | 13.2 | 22.97 | 827 | -- | -- |
| 63.12 | 0.37 | 10.7 | -0.408 | 0.144 | 1.09 | -- | -- | -0.506 | 13.1 | 23.1 | 806 | -- | -- |
| 62.49 | 0.368 | 10.7 | -0.546 | -- | 1.37 | -- | 1.22 | -0.526 | -- | 22.97 | 845 | -- | -- |
| 77.91 | 0.414 | 10.7 | -0.71 | 0.252 | -- | 0.246 | -- | -0.685 | 11.8 | -- | -- | -- | -- |
| 78.16 | 0.414 | 10.7 | -0.699 | 0.251 | -- | -- | -- | -0.684 | 12.1 | -- | -- | -- | -- |
| 64.31 | 0.373 | 10.7 | -0.394 | -- | 1.15 | -- | -- | -0.497 | -- | 23.14 | 843 | -- | -- |
| 66.91 | 0.381 | 10.7 | -- | 0.126 | 1.3 | -- | -- | -0.437 | 13.3 | 23 | 843 | -- | -- |
| 82.12 | 0.423 | 10.7 | -0.707 | -- | -- | -- | -- | -0.687 | -- | -- | -- | -- | -- |
| 91.05 | 0.446 | 10.7 | -- | 0.26 | -- | -- | -- | -0.606 | 12.2 | -- | -- | -- | -- |
| 67.86 | 0.384 | 10.7 | -- | -- | 1.35 | -- | -- | -0.431 | -- | 23.04 | 859 | -- | -- |
| 95.32 | 0.456 | 10.7 | -- | -- | -- | -- | -- | -0.609 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 8 | 59.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 15 | 60.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 26 | 60.10 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 33 | 60.24 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 39 | 60.31 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 13 |
| 44 | 60.38 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 11 |
| 104 | 61.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 210 | 61.95 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 228 | 62.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 273 | 62.44 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 11 |
| 286 | 62.50 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 6 |
| 308 | 62.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 328 | 62.70 | temperature | 20 | 720 | > th | dose independent | sin | 3 | NA |
| 339 | 62.74 | temperature | 20 | 720 | < th | dose independent | sin | 4 | NA |
| 340 | 62.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 345 | 62.76 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 352 | 62.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 443 | 63.07 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 17 |
| 519 | 63.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 580 | 63.54 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 751 | 64.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |