Os12g0536000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PE-PGRS FAMILY PROTEIN.
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Os12g0536000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PE-PGRS FAMILY PROTEIN.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.76 | 0.154 | 11.4 | -1.04 | 0.101 | -0.259 | 0.474 | 0.36 | -0.365 | 7.49 | 12.36 | 1361 | -- | -- |
| 10.97 | 0.154 | 11.4 | -1 | 0.108 | -0.249 | 0.52 | -- | -0.349 | 7.85 | 12.33 | 1341 | -- | -- |
| 11.17 | 0.156 | 11.4 | -1.03 | 0.116 | -0.257 | -- | 0.562 | -0.354 | 6.56 | 11.16 | 1323 | -- | -- |
| 11.36 | 0.157 | 11.4 | -0.98 | 0.158 | -0.29 | -- | -- | -0.354 | 3 | 8.535 | 1532 | -- | -- |
| 11.9 | 0.161 | 11.4 | -1.03 | -- | -0.243 | -- | 0.501 | -0.369 | -- | 13.1 | 1358 | -- | -- |
| 12.75 | 0.167 | 11.4 | -0.971 | 0.0818 | -- | 0.486 | -- | -0.299 | 7.08 | -- | -- | -- | -- |
| 13 | 0.169 | 11.4 | -0.965 | 0.117 | -- | -- | -- | -0.301 | 4.32 | -- | -- | -- | -- |
| 12.1 | 0.162 | 11.4 | -0.978 | -- | -0.222 | -- | -- | -0.352 | -- | 12.33 | 1431 | -- | -- |
| 32.86 | 0.267 | 11.4 | -- | 0.0712 | -0.453 | -- | -- | -0.318 | 3.63 | 10 | 7273 | -- | -- |
| 13.73 | 0.173 | 11.4 | -0.96 | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
| 37.52 | 0.287 | 11.4 | -- | 0.0985 | -- | -- | -- | -0.194 | 4.52 | -- | -- | -- | -- |
| 33.26 | 0.269 | 11.4 | -- | -- | -0.473 | -- | -- | -0.32 | -- | 9.997 | 7228 | -- | -- |
| 38.04 | 0.288 | 11.4 | -- | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.32 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 2 | 10.40 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 7 | 10.58 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 13 | 10.62 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 21 | 10.64 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 32 | 10.67 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 54 | 10.72 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 55 | 10.72 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 59 | 10.73 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 83 | 10.76 | humidity | 90.0 | 720 | < th | dose independent | rect. | 10 | 14 |
| 116 | 10.78 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 213 | 10.87 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 215 | 10.87 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 260 | 10.89 | radiation | 10.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 363 | 10.93 | humidity | 90.0 | 720 | < th | dose independent | rect. | 10 | 21 |
| 404 | 10.94 | humidity | 90.0 | 720 | < th | dose independent | sin | 18 | NA |
| 425 | 10.94 | humidity | 90.0 | 720 | < th | dose independent | rect. | 12 | 19 |
| 514 | 10.97 | radiation | 10.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 569 | 10.99 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 577 | 10.99 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 602 | 11.00 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 663 | 11.01 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 685 | 11.02 | radiation | 10.0 | 1440 | < th | dose dependent | no | NA | NA |
| 881 | 11.03 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 913 | 11.04 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 925 | 11.04 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 932 | 11.04 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 952 | 11.05 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 10 | 14 |
| 975 | 11.05 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 983 | 11.05 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 10 | 14 |