BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0536000 Os12g0536000|AK102566
         (472 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G30841.1  | chr3:12591595-12593401 FORWARD LENGTH=496          676   0.0  
AT4G09520.1  | chr4:6024970-6026751 REVERSE LENGTH=493            661   0.0  

>AT3G30841.1 | chr3:12591595-12593401 FORWARD LENGTH=496
          Length = 495

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/441 (75%), Positives = 370/441 (83%), Gaps = 3/441 (0%)

Query: 30  LMDPVEPGLACGSDTAHLSLLGYDPRVYYRGRGAFESMGAGLAMAPGDIAFKSNFATLDE 89
           LMDPVE GL CGSDTAHLSL+GYDPRVYYRGRGAFESMGAGLAM+PGDIAFKSNFATLDE
Sbjct: 53  LMDPVEVGLGCGSDTAHLSLMGYDPRVYYRGRGAFESMGAGLAMSPGDIAFKSNFATLDE 112

Query: 90  STGIIVSRRADRHFEEEGPILCAALDGLKLPSFPEYEVRVRYATEHRCGVVVKGPRLSGN 149
            +G++VSRRADRHFEEEGPILCAALDGLKL SFPEYEVRVRYATEHRCGVVVKGPRLSGN
Sbjct: 113 KSGVVVSRRADRHFEEEGPILCAALDGLKLQSFPEYEVRVRYATEHRCGVVVKGPRLSGN 172

Query: 150 ISGTDPLKDNRLHLKAEPLDDSEEAKNTAAVVNELSKEITRILVSHPINAQRSAEGKNIA 209
           ISGTDPLKDNRL L+A+PLD+SEEA +TA VVNELS+EI+RILVSHP+NA+R+A+GKNIA
Sbjct: 173 ISGTDPLKDNRLLLEAKPLDESEEATHTAKVVNELSREISRILVSHPVNAERAAQGKNIA 232

Query: 210 NVVLLRGCGIRIEVPAFETKHGLAPCMVAPTKIIAGLGLSLGIDILEAPGATGDYRXXXX 269
           N+VLLRGCGIRIEVP F  KHGL PCMVAPTKIIAGLG+SLGIDILEAPGATGDYR    
Sbjct: 233 NLVLLRGCGIRIEVPPFHEKHGLWPCMVAPTKIIAGLGMSLGIDILEAPGATGDYRTLLT 292

Query: 270 XXXXXXXXXXXXPLDTPPRVFVPGEDEYKSGKENGYDFGFLHIKAIDDAGHDKAVKLKVL 329
                       PL+  P VFVPGED +K G+ +GYDFGFLHIKAIDDAGHDKA   KV 
Sbjct: 293 SKATAIANALSAPLNPCPNVFVPGEDGHKPGRSDGYDFGFLHIKAIDDAGHDKATMFKVR 352

Query: 330 GLEAVDRAIVQLARLLWEAEKSGKYQYFLCVTGDHSTPVEYGDHSFEPVPFVLCRLRDFV 389
           GLEAVD+AI QLA+LLW+AE S  YQYFLCVTGDHSTPVEYGDHSFEPVPF +CRLRDFV
Sbjct: 353 GLEAVDKAIRQLAKLLWQAESSTHYQYFLCVTGDHSTPVEYGDHSFEPVPFTMCRLRDFV 412

Query: 390 GAM-GEDNVINFPLDDFLLPS-VKSGEDVAENIDVADRKSDQRKAFSGDSVFEFNEIAAA 447
            A+ GE  V+   LD F LP+ V+SGEDV +  + + R+ +   A  GD V E NE+AAA
Sbjct: 413 SAVGGESAVLETSLDPFPLPTVVESGEDVTKQEEESGRR-EAPLAIGGDLVAELNEVAAA 471

Query: 448 RGCLGRFPGSEMMGIIKKFIK 468
           RGCLGRF G EMMG+I  F+ 
Sbjct: 472 RGCLGRFHGGEMMGVITNFLN 492



>AT4G09520.1 | chr4:6024970-6026751 REVERSE LENGTH=493
          Length = 492

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/443 (74%), Positives = 367/443 (82%), Gaps = 6/443 (1%)

Query: 30  LMDPVEPGLACGSDTAHLSLLGYDPRVYYRGRGAFESMGAGLAMAPGDIAFKSNFATLDE 89
           LMDPVE GL CGSDTAHLSL+GYDPRVYYRGRGAFESMGAGLAM+PGDIAFKSNFATLDE
Sbjct: 49  LMDPVEVGLGCGSDTAHLSLMGYDPRVYYRGRGAFESMGAGLAMSPGDIAFKSNFATLDE 108

Query: 90  STGIIVSRRADRHFEEEGPILCAALDGLKLPSFPEYEVRVRYATEHRCGVVVKGPRLSGN 149
            +G++VSRRADRHFEEEGPILCAALDG+KLPSFPEYEVRVRYATEHRCGVVVKGP+LSGN
Sbjct: 109 DSGVVVSRRADRHFEEEGPILCAALDGMKLPSFPEYEVRVRYATEHRCGVVVKGPKLSGN 168

Query: 150 ISGTDPLKDNRLHLKAEPLDDSEEAKNTAAVVNELSKEITRILVSHPINAQRSAEGKNIA 209
           ISGTDPLKDNRL L+A+PLD+SEEA +TA VVNELS+EI+RILVSHP+N +R+A+GKNIA
Sbjct: 169 ISGTDPLKDNRLLLEAKPLDESEEANHTAKVVNELSREISRILVSHPVNVKRAAQGKNIA 228

Query: 210 NVVLLRGCGIRIEVPAFETKHGLAPCMVAPTKIIAGLGLSLGIDILEAPGATGDYRXXXX 269
           N+VLLRGCGIRIEVP F  KHGL PCMVAPTKIIAGLG+SLGIDILEA GATGDYR    
Sbjct: 229 NLVLLRGCGIRIEVPPFHEKHGLWPCMVAPTKIIAGLGMSLGIDILEALGATGDYRTLLT 288

Query: 270 XXXXXXXXXXXXPLDTPPRVFVPGEDEYKSGKENGYDFGFLHIKAIDDAGHDKAVKLKVL 329
                       PL+  P VF P ED +K G+ +GYDFGFLHIKAIDDAGHDKA   KV 
Sbjct: 289 SKAIAIANALSAPLNPCPNVFEPAEDGHKPGRSDGYDFGFLHIKAIDDAGHDKATLFKVR 348

Query: 330 GLEAVDRAIVQLARLLWEAEKSGKYQYFLCVTGDHSTPVEYGDHSFEPVPFVLCRLRDFV 389
           GLEAVD+AI QLA+LLW+AE S  YQYFLCVTGDHSTPVEYGDHSFEPVPF +CRL+DFV
Sbjct: 349 GLEAVDKAIRQLAKLLWQAESSSNYQYFLCVTGDHSTPVEYGDHSFEPVPFTMCRLKDFV 408

Query: 390 GAM-GEDNVINFPLDDFLLPS-VKSGEDV--AENIDVADRKSDQRKAFSGDSVFEFNEIA 445
            A+ GE  ++   LD F LP+ + S E+V   E  D   R++    A SGDSV E NEIA
Sbjct: 409 RAVGGESALLETSLDPFPLPTDIASSENVIGKEEEDCGRREASL--AISGDSVSELNEIA 466

Query: 446 AARGCLGRFPGSEMMGIIKKFIK 468
           AAR CLGRF G EMMG+I KF+K
Sbjct: 467 AARRCLGRFHGGEMMGVITKFLK 489



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,765,135
Number of extensions: 417496
Number of successful extensions: 851
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 2
Length of query: 472
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 370
Effective length of database: 8,310,137
Effective search space: 3074750690
Effective search space used: 3074750690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)