Os12g0535400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0535400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.91 | 0.27 | 11 | -0.429 | 1.2 | 1 | -0.952 | 0.457 | -0.391 | 7.17 | 20.19 | 303 | -- | -- |
| 32.86 | 0.267 | 11 | -0.414 | 1.21 | 0.825 | -0.921 | -- | -0.378 | 7.15 | 20.68 | 311 | -- | -- |
| 34.41 | 0.273 | 10.9 | -0.358 | 1.18 | 0.304 | -- | -1.31 | -0.37 | 7.02 | 21.82 | 496 | -- | -- |
| 35.06 | 0.276 | 11 | -0.435 | 1.21 | 0.792 | -- | -- | -0.379 | 7.08 | 20.71 | 345 | -- | -- |
| 94.05 | 0.452 | 10.9 | 0.0802 | -- | 1.24 | -- | -2.34 | -0.15 | -- | 45.03 | 490 | -- | -- |
| 36.9 | 0.285 | 11 | -0.576 | 1.23 | -- | -0.906 | -- | -0.447 | 7.09 | -- | -- | -- | -- |
| 39.04 | 0.293 | 11 | -0.595 | 1.23 | -- | -- | -- | -0.445 | 7.03 | -- | -- | -- | -- |
| 97.06 | 0.459 | 11 | -0.295 | -- | 1.13 | -- | -- | -0.205 | -- | 30.1 | 451 | -- | -- |
| 39.59 | 0.293 | 10.9 | -- | 1.19 | 1.09 | -- | -- | -0.318 | 7.12 | 20.6 | 340 | -- | -- |
| 118.82 | 0.509 | 11 | -0.57 | -- | -- | -- | -- | -0.423 | -- | -- | -- | -- | -- |
| 48.37 | 0.325 | 11 | -- | 1.22 | -- | -- | -- | -0.379 | 7.06 | -- | -- | -- | -- |
| 99.14 | 0.464 | 10.9 | -- | -- | 1.23 | -- | -- | -0.156 | -- | 29.94 | 463 | -- | -- |
| 127.4 | 0.527 | 11 | -- | -- | -- | -- | -- | -0.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.48 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 17 |
| 16 | 30.82 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 9 |
| 41 | 31.44 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 4 |
| 45 | 31.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 9 |
| 60 | 31.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 63 | 31.63 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 12 |
| 71 | 31.67 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 15 |
| 72 | 31.68 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 85 | 31.73 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 93 | 31.76 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 129 | 31.90 | temperature | 20 | 270 | > th | dose independent | sin | 6 | NA |
| 138 | 31.93 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 181 | 32.10 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 12 |
| 197 | 32.17 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 225 | 32.25 | temperature | 20 | 270 | < th | dose dependent | sin | 8 | NA |
| 246 | 32.30 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 6 |
| 248 | 32.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 278 | 32.38 | temperature | 15 | 720 | > th | dose dependent | sin | 13 | NA |
| 291 | 32.42 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 321 | 32.49 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 339 | 32.54 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 12 |
| 354 | 32.56 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 14 |
| 355 | 32.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 398 | 32.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 402 | 32.62 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 411 | 32.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 445 | 32.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 478 | 32.71 | temperature | 20 | 720 | < th | dose independent | sin | 13 | NA |
| 481 | 32.71 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 485 | 32.71 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 501 | 32.74 | temperature | 15 | 270 | > th | dose independent | rect. | 8 | 8 |
| 511 | 32.75 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 518 | 32.76 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 536 | 32.78 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 537 | 32.78 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 541 | 32.78 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 543 | 32.79 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 10 |
| 569 | 32.81 | humidity | 50 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 599 | 32.83 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 649 | 32.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 655 | 32.88 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 657 | 32.88 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 659 | 32.88 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 8 |
| 660 | 32.88 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 697 | 32.90 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 739 | 32.93 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 740 | 32.93 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 6 |
| 752 | 32.94 | humidity | 80 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 797 | 32.96 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 21 |
| 800 | 32.96 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |
| 808 | 32.96 | humidity | 60 | 43200 | > th | dose dependent | rect. | 10 | 15 |
| 813 | 32.96 | humidity | 60 | 43200 | > th | dose dependent | rect. | 8 | 18 |
| 839 | 32.98 | atmosphere | 995 | 270 | > th | dose independent | rect. | 11 | 15 |
| 869 | 32.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 881 | 33.00 | temperature | 30 | 90 | < th | dose independent | rect. | 11 | 6 |
| 917 | 33.01 | temperature | 20 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 927 | 33.02 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 21 | 17 |
| 929 | 33.02 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 20 | 19 |
| 975 | 33.04 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 984 | 33.04 | humidity | 60 | 43200 | > th | dose dependent | sin | 17 | NA |
| 1000 | 33.05 | humidity | 50 | 14400 | > th | dose independent | sin | 12 | NA |