FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0529400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin-binding protein 4 precursor (ABP).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.35 (0.0219) R2 : 0.0603
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.249 (0.046) R2dN8 : 0.0779 R2N8 : 0.0603
σ : 0.412
deviance : 77.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.94 0.382 9.37 -0.472 0.237 -0.395 0.298 -0.249 -0.359 3.74 80 88 -- --
66.09 0.379 9.37 -0.486 0.231 -0.398 0.143 -- -0.359 3.76 79.97 88 -- --
66.11 0.379 9.37 -0.483 0.229 -0.387 -- -0.105 -0.361 3.56 79.57 85 -- --
66.14 0.379 9.37 -0.49 0.229 -0.391 -- -- -0.361 3.66 79.96 87 -- --
67.51 0.383 9.37 -0.494 -- -0.231 -- -0.0697 -0.335 -- 81 89 -- --
70.25 0.393 9.36 -0.528 0.0512 -- 0.185 -- -0.307 11.9 -- -- -- --
70.35 0.393 9.36 -0.519 0.0584 -- -- -- -0.305 13.9 -- -- -- --
67.53 0.383 9.37 -0.495 -- -0.234 -- -- -0.338 -- 81.25 88 -- --
72.41 0.396 9.36 -- 0.238 -0.421 -- -- -0.313 3.71 80.81 89 -- --
70.56 0.392 9.36 -0.522 -- -- -- -- -0.307 -- -- -- -- --
77.46 0.412 9.35 -- 0.0681 -- -- -- -0.248 14.1 -- -- -- --
73.92 0.4 9.36 -- -- -0.265 -- -- -0.292 -- 82.56 89 -- --
77.74 0.412 9.35 -- -- -- -- -- -0.249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.05 temperature 25.0 30 > th dose dependent rect. 6 1
3 56.53 atmosphere 1010.0 30 < th dose independent rect. 6 1
4 56.73 radiation 10.0 30 < th dose independent rect. 6 1
6 57.71 atmosphere 1010.0 30 < th dose dependent rect. 6 1
9 58.51 wind 3.0 30 > th dose dependent rect. 6 1
13 60.14 wind 3.0 30 > th dose independent rect. 6 1
14 60.91 humidity 90.0 30 < th dose dependent rect. 6 1
19 61.35 radiation 1.0 10 > th dose dependent rect. 6 1
24 61.81 radiation 20.0 30 < th dose dependent rect. 6 1
26 61.91 temperature 25.0 30 > th dose independent rect. 6 1
27 62.03 wind 1.0 30 < th dose independent rect. 6 1
39 63.24 humidity 80.0 30 > th dose independent rect. 6 1
40 63.30 radiation 1.0 30 > th dose independent rect. 6 1
41 63.32 wind 9.0 1440 < th dose independent rect. 7 1
43 63.32 temperature 10.0 1440 > th dose independent rect. 7 1
47 63.32 temperature 30.0 1440 < th dose independent rect. 7 1
51 63.32 humidity 50.0 1440 > th dose independent rect. 7 1
56 63.32 atmosphere 995.0 1440 > th dose independent rect. 7 1
57 63.32 atmosphere 1015.0 1440 < th dose independent rect. 7 1
58 63.32 temperature 10.0 1440 > th dose independent rect. 8 23
61 63.35 atmosphere 1000.0 30 > th dose independent rect. 6 1
63 63.38 wind 5.0 30 < th dose independent rect. 6 1
66 63.38 temperature 10.0 30 > th dose independent rect. 6 1
68 63.38 temperature 30.0 30 < th dose independent rect. 6 1
69 63.38 humidity 50.0 30 > th dose independent rect. 6 1
77 63.38 precipitation 0.1 30 < th dose independent rect. 6 1
78 63.38 temperature 10.0 30 > th dose independent rect. 7 23
79 63.38 precipitation 0.1 30 < th dose dependent rect. 6 1
82 63.51 humidity 90.0 30 < th dose independent rect. 6 1
87 63.75 humidity 50.0 30 > th dose dependent rect. 6 1
109 63.94 wind 9.0 30 < th dose dependent rect. 6 1
111 64.08 wind 9.0 30 < th dose independent rect. 7 23
116 64.36 atmosphere 995.0 30 > th dose dependent rect. 6 1
117 64.37 atmosphere 1000.0 30 > th dose independent rect. 14 17
118 64.39 atmosphere 1000.0 90 > th dose independent rect. 11 20
141 65.13 atmosphere 1000.0 270 > th dose independent rect. 9 22
154 65.41 humidity 80.0 30 > th dose independent sin 7 NA
155 65.41 humidity 70.0 90 > th dose dependent rect. 21 10
157 65.42 humidity 70.0 90 > th dose dependent rect. 17 14
158 65.42 humidity 50.0 30 > th dose dependent rect. 14 17
162 65.46 humidity 80.0 90 > th dose dependent rect. 11 20
163 65.46 humidity 80.0 90 > th dose dependent rect. 9 22
166 65.49 atmosphere 1000.0 90 > th dose independent rect. 17 14
169 65.51 humidity 50.0 90 > th dose dependent rect. 17 14
172 65.53 humidity 70.0 90 > th dose dependent rect. 15 16
174 65.55 humidity 70.0 90 > th dose dependent rect. 19 12
182 65.60 humidity 80.0 90 > th dose dependent sin 7 NA
187 65.62 radiation 40.0 1440 < th dose independent rect. 7 1
196 65.68 radiation 1.0 10 > th dose dependent rect. 18 13
217 65.73 atmosphere 995.0 30 > th dose dependent rect. 14 17
221 65.74 humidity 80.0 90 > th dose dependent rect. 21 22
234 65.78 humidity 80.0 30 < th dose independent sin 7 NA
236 65.78 humidity 80.0 90 > th dose dependent rect. 23 8
241 65.80 radiation 10.0 90 < th dose independent sin 4 NA
243 65.81 temperature 30.0 4320 < th dose independent rect. 11 2
262 65.84 humidity 80.0 90 > th dose dependent rect. 19 23
271 65.86 temperature 30.0 4320 > th dose independent rect. 11 2
277 65.87 radiation 40.0 90 < th dose independent rect. 11 20
284 65.88 humidity 80.0 90 > th dose dependent rect. 23 20
286 65.90 humidity 90.0 10 < th dose independent rect. 7 23
291 65.91 temperature 30.0 30 < th dose dependent rect. 6 1
296 65.92 humidity 80.0 90 > th dose dependent rect. 17 22
297 65.92 humidity 80.0 90 > th dose dependent rect. 15 23
310 65.95 humidity 80.0 90 > th dose dependent no NA NA
314 65.96 humidity 80.0 90 > th dose dependent rect. 13 23
320 65.98 humidity 80.0 90 > th dose dependent rect. 23 16
328 65.99 radiation 10.0 90 < th dose independent rect. 3 14
336 66.01 radiation 10.0 90 > th dose independent sin 5 NA
341 66.02 wind 9.0 10 < th dose dependent rect. 7 7
342 66.02 humidity 80.0 90 > th dose dependent rect. 21 18
345 66.03 wind 5.0 10 < th dose independent rect. 7 7
353 66.04 temperature 15.0 90 > th dose independent rect. 7 20
354 66.04 humidity 80.0 90 > th dose dependent rect. 23 14
357 66.04 humidity 80.0 90 > th dose dependent rect. 1 23
359 66.05 precipitation 0.1 30 < th dose independent rect. 7 23
366 66.05 radiation 40.0 90 < th dose dependent rect. 11 20
369 66.05 precipitation 0.1 30 < th dose dependent rect. 7 23
372 66.06 temperature 25.0 4320 > th dose dependent rect. 5 2
376 66.06 atmosphere 995.0 90 > th dose dependent rect. 11 20
384 66.07 radiation 10.0 90 < th dose independent rect. 3 12
403 66.08 humidity 80.0 90 > th dose dependent rect. 21 16
407 66.09 humidity 80.0 90 > th dose independent rect. 3 4
411 66.10 humidity 60.0 43200 > th dose independent rect. 11 1
412 66.10 atmosphere 1000.0 90 > th dose independent rect. 23 8
413 66.10 humidity 80.0 90 > th dose independent rect. 17 14
422 66.11 humidity 80.0 90 > th dose dependent rect. 3 23
425 66.12 humidity 80.0 90 > th dose dependent rect. 19 20
437 66.14 temperature 25.0 4320 < th dose independent rect. 5 1
463 66.19 temperature 30.0 4320 < th dose independent rect. 16 22
476 66.20 radiation 20.0 90 < th dose independent rect. 11 20
485 66.21 atmosphere 1000.0 90 > th dose independent rect. 21 10
490 66.22 atmosphere 1000.0 90 > th dose independent rect. 3 4
491 66.22 humidity 90.0 270 < th dose independent rect. 23 11
516 66.25 radiation 20.0 43200 < th dose independent rect. 10 1
529 66.26 temperature 30.0 4320 < th dose independent rect. 20 18
540 66.27 radiation 10.0 30 < th dose independent rect. 13 18
553 66.28 temperature 30.0 4320 < th dose independent rect. 24 14
559 66.29 humidity 80.0 90 > th dose independent rect. 23 8
567 66.29 wind 1.0 30 > th dose independent rect. 7 22
584 66.31 humidity 80.0 90 > th dose independent rect. 21 10
609 66.33 temperature 25.0 4320 > th dose independent rect. 5 1
628 66.35 temperature 30.0 43200 < th dose independent rect. 4 5
650 66.36 wind 9.0 43200 > th dose dependent rect. 13 1
686 66.38 radiation 40.0 43200 < th dose dependent rect. 10 1
689 66.39 radiation 20.0 43200 > th dose independent rect. 10 1
692 66.39 humidity 80.0 14400 > th dose independent rect. 21 5
696 66.39 humidity 90.0 90 < th dose dependent sin 9 NA
701 66.40 humidity 80.0 14400 > th dose independent rect. 22 3
704 66.40 humidity 80.0 90 > th dose independent rect. 19 12
717 66.41 atmosphere 1015.0 90 < th dose independent rect. 7 20
726 66.42 temperature 30.0 43200 > th dose independent rect. 8 1
777 66.45 temperature 30.0 4320 > th dose independent sin 7 NA
782 66.45 humidity 50.0 30 > th dose independent rect. 14 17
786 66.45 atmosphere 1015.0 30 < th dose independent rect. 7 23
788 66.45 temperature 30.0 43200 > th dose dependent rect. 8 1
843 66.47 wind 5.0 10 < th dose independent rect. 7 22
844 66.47 radiation 1.0 43200 > th dose dependent rect. 10 1
846 66.48 atmosphere 1000.0 4320 < th dose independent rect. 17 1
874 66.49 wind 7.0 90 < th dose independent rect. 7 20
875 66.49 radiation 10.0 90 > th dose independent rect. 15 23
876 66.49 humidity 80.0 270 > th dose dependent rect. 3 1
881 66.49 humidity 70.0 90 > th dose dependent rect. 3 4
885 66.50 atmosphere 1000.0 4320 > th dose independent rect. 17 1
886 66.50 radiation 40.0 43200 > th dose independent rect. 14 1
922 66.52 radiation 20.0 43200 > th dose independent rect. 15 1
925 66.52 wind 9.0 30 < th dose independent rect. 7 7
933 66.52 temperature 10.0 30 > th dose dependent rect. 7 20
955 66.54 radiation 30.0 43200 > th dose independent sin 9 NA
961 66.54 humidity 60.0 43200 > th dose independent rect. 10 3
989 66.54 radiation 40.0 43200 > th dose independent rect. 14 18