BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0529400 Os12g0529400|AK111608
         (206 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02980.1  | chr4:1319902-1321449 REVERSE LENGTH=199            207   3e-54

>AT4G02980.1 | chr4:1319902-1321449 REVERSE LENGTH=199
          Length = 198

 Score =  207 bits (527), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 121/164 (73%), Gaps = 3/164 (1%)

Query: 45  CPRDNS-LVKDVSKMYQSNYGREGFSHITIAGALAHGMKEVEVWLQTFGPGQRTPIHRHS 103
           CP +   +V+++S + Q NYGR G SH+T+AG++ HGMKEVE+WLQTF PG  TPIHRHS
Sbjct: 36  CPINGLPIVRNISDLPQDNYGRPGLSHMTVAGSVLHGMKEVEIWLQTFAPGSETPIHRHS 95

Query: 104 CEEVFVVXXXXXXXXXXXXXXXYPGQPQEIPVFQNSTFSVPVNDPHQVWNSDEHEDLQVL 163
           CEEVFVV               +PG+P E P+F NST  +P+ND HQV N+  HEDLQVL
Sbjct: 96  CEEVFVVLKGSGTLYLAETHGNFPGKPIEFPIFANSTIHIPINDAHQVKNTG-HEDLQVL 154

Query: 164 VIISRPPVKIFTYDDWSVPHTAAKLKFPYFWDEDCL-PAPKDEL 206
           VIISRPP+KIF Y+DW +PHTAA+LKFPY+WDE C+  + KDEL
Sbjct: 155 VIISRPPIKIFIYEDWFMPHTAARLKFPYYWDEQCIQESQKDEL 198



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,019,393
Number of extensions: 147202
Number of successful extensions: 241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)