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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0528100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.82 (0.0708) R2 : 0.452
β1 : -2.8 (0.258) R2dD : 0.151 R2D : 0.0252
β2 : 1.37 (0.176) R2dC : 0.074 R2C : -0.0145
β3 : -1.53 (0.25) R2dE : 0.0537 R2E : -0.0567
β4 : -2.57 (0.741) R2dD*C : 0.0145 R2D*C : -0.0523
β5 : -5.43 (1.14) R2dD*E : 0.0298 R2D*E : -0.0168
γ1 : -2.06 (0.157) R2dN8 : 0.309 R2N8 : 0.0951
σ : 1.31
deviance : 778.61
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_____
C
peak time of C : 8.31
E
wheather : atmosphere
threshold : 1005
memory length : 4384
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
778.61 1.31 5.82 -2.8 1.37 -1.53 -2.57 -5.43 -2.06 8.31 1005 4384 -- --
816.31 1.33 5.81 -2.68 1.41 -1.77 -2.57 -- -2.17 8.18 1005 4347 -- --
798.09 1.32 5.81 -2.88 1.39 -1.5 -- -5.64 -2.04 7.98 1005 4386 -- --
836.69 1.35 5.81 -2.73 1.43 -1.76 -- -- -2.15 8.01 1005 4345 -- --
903.5 1.4 5.85 -2.89 -- -1.45 -- -5.89 -2.02 -- 1005 4387 -- --
910.99 1.41 5.7 -2.82 1.38 -- -2.47 -- -1.77 8.26 -- -- -- --
929.36 1.43 5.7 -2.89 1.39 -- -- -- -1.77 8 -- -- -- --
946.59 1.43 5.82 -2.73 -- -1.72 -- -- -2.11 -- 1005 4343 -- --
1021.66 1.49 5.76 -- 1.44 -1.92 -- -- -1.97 7.95 1006 4314 -- --
1035.27 1.5 5.74 -2.88 -- -- -- -- -1.76 -- -- -- -- --
1150.05 1.59 5.63 -- 1.37 -- -- -- -1.45 8.15 -- -- -- --
1134.33 1.57 5.77 -- -- -1.93 -- -- -1.92 -- 1005 4341 -- --
1254.07 1.65 5.67 -- -- -- -- -- -1.44 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 768.55 atmosphere 1005 4320 > th dose independent rect. 20 1
2 768.73 atmosphere 1005 4320 > th dose independent rect. 19 3
8 773.93 atmosphere 1005 4320 > th dose independent rect. 19 19
15 775.36 atmosphere 1005 4320 > th dose independent rect. 19 16
17 775.44 atmosphere 1005 4320 > th dose independent rect. 19 8
20 775.71 atmosphere 1005 4320 < th dose independent rect. 19 19
27 776.13 atmosphere 1005 4320 < th dose independent rect. 19 3
45 776.91 atmosphere 1005 4320 > th dose independent rect. 7 7
51 777.17 atmosphere 1005 4320 > th dose independent rect. 9 5
57 777.38 atmosphere 1005 4320 < th dose independent rect. 19 16
73 777.88 atmosphere 1005 4320 < th dose independent rect. 5 9
85 778.01 atmosphere 1005 4320 > th dose independent rect. 13 1
124 778.98 atmosphere 1005 4320 < th dose independent rect. 13 1
133 779.16 atmosphere 1005 4320 < th dose independent rect. 9 5
140 779.28 atmosphere 1005 4320 < th dose independent rect. 19 10
143 779.32 atmosphere 1005 4320 > th dose independent sin 8 NA
194 780.27 atmosphere 1005 4320 < th dose independent sin 7 NA
280 781.89 atmosphere 1005 4320 < th dose independent rect. 2 21
314 782.35 atmosphere 1005 4320 < th dose independent rect. 12 23
317 782.38 atmosphere 1005 4320 < th dose independent no NA NA
323 782.46 atmosphere 1005 4320 < th dose independent rect. 5 23
333 782.58 atmosphere 1005 4320 < th dose independent rect. 7 23
337 782.60 atmosphere 1005 4320 > th dose independent rect. 1 22
353 782.72 atmosphere 1005 4320 < th dose independent rect. 9 23
376 782.91 atmosphere 1005 4320 > th dose independent no NA NA
390 783.01 atmosphere 1005 4320 > th dose independent rect. 5 23
395 783.07 atmosphere 1005 4320 > th dose independent rect. 12 23
412 783.21 atmosphere 1005 4320 > th dose independent rect. 9 23
493 783.88 atmosphere 1005 4320 < th dose independent rect. 7 2
648 785.73 temperature 20 90 > th dose dependent rect. 16 17
846 788.80 temperature 20 10 > th dose dependent rect. 16 17
918 790.07 temperature 15 270 > th dose dependent rect. 14 17
975 791.33 temperature 20 90 > th dose dependent rect. 17 12
985 791.72 temperature 20 90 > th dose dependent rect. 17 14
999 792.22 temperature 15 270 > th dose dependent rect. 15 14