Os12g0528000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0528000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.35 | 0.52 | 6.99 | 1.58 | 0.283 | 1.32 | -1.14 | -7.86 | 0.742 | 5.13 | 30 | 1438 | -- | -- |
| 122.76 | 0.516 | 6.89 | 2.9 | 0.321 | 0.971 | -1.33 | -- | 0.466 | 4.55 | 24.27 | 10230 | -- | -- |
| 125.1 | 0.521 | 6.98 | 1.6 | 0.287 | 1.25 | -- | -7.49 | 0.754 | 6.16 | 30.1 | 1407 | -- | -- |
| 124.01 | 0.519 | 6.92 | 2.78 | 0.234 | 0.929 | -- | -- | 0.334 | 6.62 | 22.9 | 11836 | -- | -- |
| 129.4 | 0.53 | 6.99 | 1.61 | -- | 1.27 | -- | -7.47 | 0.757 | -- | 30.09 | 1407 | -- | -- |
| 139.2 | 0.553 | 6.81 | 3.34 | 0.284 | -- | -1.12 | -- | 0.773 | 4.77 | -- | -- | -- | -- |
| 142.34 | 0.559 | 6.81 | 3.34 | 0.285 | -- | -- | -- | 0.779 | 5.46 | -- | -- | -- | -- |
| 126.41 | 0.524 | 6.92 | 2.67 | -- | 0.951 | -- | -- | 0.298 | -- | 23.6 | 16914 | -- | -- |
| 151.02 | 0.572 | 7.05 | -- | 0.273 | 2.61 | -- | -- | -0.285 | 6.04 | 19.12 | 47520 | -- | -- |
| 146.56 | 0.566 | 6.81 | 3.35 | -- | -- | -- | -- | 0.786 | -- | -- | -- | -- | -- |
| 437.19 | 0.978 | 6.89 | -- | 0.342 | -- | -- | -- | 0.406 | 5.06 | -- | -- | -- | -- |
| 154.78 | 0.579 | 7.06 | -- | -- | 2.61 | -- | -- | -0.291 | -- | 19.32 | 47520 | -- | -- |
| 443.34 | 0.983 | 6.9 | -- | -- | -- | -- | -- | 0.414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.53 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 3 | 109.84 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 6 | 110.06 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 7 | 110.60 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 11 | 111.30 | wind | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 13 | 111.41 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 14 | 111.41 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 18 | 111.75 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 13 |
| 28 | 112.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 46 | 113.54 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 69 | 115.09 | wind | 1 | 43200 | < th | dose independent | sin | 14 | NA |
| 77 | 115.44 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 87 | 116.05 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 98 | 116.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 99 | 116.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 101 | 116.74 | wind | 1 | 43200 | > th | dose independent | sin | 13 | NA |
| 102 | 116.80 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 105 | 117.02 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 115 | 117.36 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 116 | 117.37 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 119 | 117.39 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 122 | 117.44 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 123 | 117.44 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 124 | 117.46 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 127 | 117.59 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 136 | 117.72 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 139 | 117.74 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 142 | 117.78 | radiation | 10 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 143 | 117.78 | radiation | 10 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 149 | 117.79 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 153 | 117.79 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 156 | 117.80 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 162 | 117.82 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 163 | 117.83 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 172 | 117.88 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 173 | 117.88 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 262 | 118.18 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 276 | 118.22 | temperature | 20 | 14400 | < th | dose independent | sin | 14 | NA |
| 285 | 118.24 | temperature | 20 | 14400 | > th | dose independent | sin | 13 | NA |
| 405 | 118.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 22 |
| 449 | 118.58 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 482 | 118.61 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 492 | 118.63 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 524 | 118.69 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 543 | 118.71 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 544 | 118.72 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 576 | 118.79 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 584 | 118.79 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 590 | 118.80 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 20 |
| 593 | 118.80 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 742 | 118.99 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 751 | 119.00 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 22 |
| 780 | 119.04 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 783 | 119.05 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 792 | 119.06 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 809 | 119.09 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 820 | 119.10 | temperature | 20 | 14400 | < th | dose independent | rect. | 23 | 23 |
| 839 | 119.13 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 895 | 119.24 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 963 | 119.39 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 965 | 119.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 966 | 119.40 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 972 | 119.40 | radiation | 40 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 978 | 119.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 989 | 119.43 | radiation | 10 | 43200 | < th | dose independent | sin | 11 | NA |
| 993 | 119.43 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 11 |