BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0528000 Os12g0528000|AK069942
         (426 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52170.1  | chr3:19347039-19349099 REVERSE LENGTH=500           99   4e-21
AT5G58210.3  | chr5:23552427-23554045 FORWARD LENGTH=381           80   3e-15

>AT3G52170.1 | chr3:19347039-19349099 REVERSE LENGTH=500
          Length = 499

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 55/67 (82%)

Query: 56  KKPRVRKTKEERREMVESFVNTYRVSNDGKFPSVNLTHKEVGGSYYIVREIVRDIIQENR 115
           K+ R R  KEER+ +VESF+  ++  N+G FPS++LTHKEVGGS+Y +REIVR+IIQENR
Sbjct: 24  KRTRNRIPKEERKTLVESFIKKHQKLNNGSFPSLSLTHKEVGGSFYTIREIVREIIQENR 83

Query: 116 VLGPGGL 122
           VLGPG L
Sbjct: 84  VLGPGDL 90



>AT5G58210.3 | chr5:23552427-23554045 FORWARD LENGTH=381
          Length = 380

 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 6/89 (6%)

Query: 43  AKGFGVVRCC---VQEKKPRVRKTKEERREMVESFVNTYRVSNDGKFPSVNLTHKEVGGS 99
           A+ +G    C      K P+ R +K++RR +VESFVN YR +N G+FPS++ THK+VGGS
Sbjct: 28  ARFYGSPAVCESLTTSKIPK-RLSKDDRRALVESFVNEYRATNAGRFPSLDATHKQVGGS 86

Query: 100 YYIVREIVRDIIQENRVLGPGGLNATALS 128
           YYIVR+I +++  + +   P  + A ALS
Sbjct: 87  YYIVRDIFQELKLKPKAHMP--IVAKALS 113



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.123    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,120,204
Number of extensions: 386619
Number of successful extensions: 1393
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1395
Number of HSP's successfully gapped: 4
Length of query: 426
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 325
Effective length of database: 8,337,553
Effective search space: 2709704725
Effective search space used: 2709704725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 113 (48.1 bits)