Os12g0525300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os12g0525300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.53 | 0.489 | 7.47 | 0.508 | 0.262 | 2.21 | 0.875 | -2.19 | 1.05 | 2.7 | 31.57 | 131 | -- | -- |
| 112.16 | 0.493 | 7.51 | 0.219 | 0.225 | 2.18 | 0.369 | -- | 0.999 | 3.45 | 30.6 | 130 | -- | -- |
| 110.28 | 0.489 | 7.49 | 0.359 | 0.273 | 2.21 | -- | -1.38 | 1.01 | 3.67 | 31.46 | 122 | -- | -- |
| 111.82 | 0.492 | 7.51 | 0.14 | 0.252 | 2.2 | -- | -- | 0.974 | 4.06 | 30.85 | 108 | -- | -- |
| 112.77 | 0.495 | 7.48 | 0.403 | -- | 2.48 | -- | -1.22 | 1.06 | -- | 31.47 | 110 | -- | -- |
| 171.59 | 0.614 | 7.6 | -0.369 | 0.948 | -- | 0.555 | -- | 0.582 | 3.36 | -- | -- | -- | -- |
| 172.56 | 0.615 | 7.6 | -0.38 | 0.952 | -- | -- | -- | 0.578 | 3.4 | -- | -- | -- | -- |
| 114.27 | 0.498 | 7.51 | 0.211 | -- | 2.44 | -- | -- | 1.01 | -- | 30.98 | 110 | -- | -- |
| 112.32 | 0.494 | 7.52 | -- | 0.276 | 2.13 | -- | -- | 0.945 | 3.97 | 30.89 | 109 | -- | -- |
| 223.52 | 0.699 | 7.6 | -0.339 | -- | -- | -- | -- | 0.604 | -- | -- | -- | -- | -- |
| 176.36 | 0.621 | 7.59 | -- | 0.945 | -- | -- | -- | 0.621 | 3.4 | -- | -- | -- | -- |
| 115.33 | 0.5 | 7.51 | -- | -- | 2.39 | -- | -- | 0.982 | -- | 31.08 | 108 | -- | -- |
| 226.56 | 0.703 | 7.59 | -- | -- | -- | -- | -- | 0.641 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 2 | 109.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 3 | 109.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 4 | 109.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 7 | 109.76 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 9 | 110.19 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 13 | 110.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 15 | 110.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 16 | 110.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 19 | 110.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 26 | 111.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 30 | 111.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 32 | 111.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 38 | 111.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 71 | 112.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 73 | 112.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 106 | 114.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 107 | 114.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 111 | 114.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 114 | 114.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 128 | 114.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 258 | 117.09 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 263 | 117.21 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 269 | 117.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 293 | 117.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 322 | 118.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 325 | 118.07 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 370 | 118.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 395 | 118.97 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 408 | 119.10 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 422 | 119.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 481 | 119.77 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 483 | 119.78 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 492 | 119.85 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 528 | 120.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 559 | 120.31 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 618 | 120.67 | wind | 9 | 43200 | > th | dose dependent | sin | 17 | NA |
| 634 | 120.73 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 648 | 120.80 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 21 |
| 679 | 120.93 | temperature | 10 | 1440 | > th | dose dependent | sin | 5 | NA |
| 687 | 120.96 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 22 |
| 726 | 121.10 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 813 | 121.39 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 887 | 121.68 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 920 | 121.81 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 926 | 121.82 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 22 |
| 980 | 122.05 | wind | 9 | 43200 | > th | dose independent | sin | 13 | NA |