Os12g0515400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plastidic 2-oxoglutarate/malate transporter.
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Os12g0515400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Plastidic 2-oxoglutarate/malate transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.31 | 0.343 | 12.9 | 0.433 | 1.46 | 1.26 | -0.462 | -0.602 | -0.475 | 7.88 | 18.97 | 7983 | -- | -- |
| 52.96 | 0.339 | 12.9 | 0.456 | 1.47 | 1.5 | -0.505 | -- | -0.487 | 7.88 | 18.7 | 8022 | -- | -- |
| 53.58 | 0.341 | 12.9 | 0.433 | 1.47 | 1.35 | -- | -0.462 | -0.483 | 7.85 | 18.8 | 7978 | -- | -- |
| 53.51 | 0.341 | 12.9 | 0.427 | 1.46 | 1.54 | -- | -- | -0.491 | 7.85 | 18.67 | 7975 | -- | -- |
| 169.45 | 0.606 | 12.9 | 0.483 | -- | 1.5 | -- | -0.274 | -0.44 | -- | 18.6 | 7952 | -- | -- |
| 79.49 | 0.418 | 13 | -0.544 | 1.47 | -- | -0.471 | -- | -0.83 | 7.95 | -- | -- | -- | -- |
| 80.14 | 0.419 | 13 | -0.557 | 1.47 | -- | -- | -- | -0.83 | 7.94 | -- | -- | -- | -- |
| 169.25 | 0.606 | 12.9 | 0.466 | -- | 1.56 | -- | -- | -0.45 | -- | 18.75 | 7943 | -- | -- |
| 56.63 | 0.35 | 12.9 | -- | 1.54 | 1.37 | -- | -- | -0.583 | 7.73 | 18.4 | 8040 | -- | -- |
| 198.29 | 0.658 | 13 | -0.542 | -- | -- | -- | -- | -0.81 | -- | -- | -- | -- | -- |
| 88.33 | 0.44 | 13 | -- | 1.47 | -- | -- | -- | -0.768 | 7.96 | -- | -- | -- | -- |
| 172.31 | 0.611 | 13 | -- | -- | 1.22 | -- | -- | -0.558 | -- | 18.71 | 7922 | -- | -- |
| 206.03 | 0.67 | 13 | -- | -- | -- | -- | -- | -0.75 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.47 | humidity | 70 | 43200 | < th | dose dependent | rect. | 20 | 15 |
| 9 | 51.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 13 | 51.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 22 | 51.89 | humidity | 60 | 43200 | > th | dose independent | sin | 9 | NA |
| 23 | 51.90 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 24 | 51.91 | humidity | 60 | 43200 | < th | dose independent | sin | 9 | NA |
| 32 | 51.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 33 | 51.95 | humidity | 70 | 43200 | < th | dose dependent | sin | 9 | NA |
| 37 | 51.97 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 47 | 52.05 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 50 | 52.07 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 51 | 52.09 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 75 | 52.21 | humidity | 90 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 77 | 52.22 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 84 | 52.26 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 92 | 52.28 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 102 | 52.31 | humidity | 60 | 43200 | < th | dose dependent | sin | 6 | NA |
| 112 | 52.34 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 115 | 52.34 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 15 |
| 122 | 52.36 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 126 | 52.36 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 151 | 52.44 | humidity | 50 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 152 | 52.45 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 172 | 52.50 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 19 |
| 176 | 52.51 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 218 | 52.60 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 222 | 52.61 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 23 |
| 224 | 52.61 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 23 |
| 227 | 52.62 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 21 |
| 257 | 52.65 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 357 | 52.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 380 | 52.81 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 397 | 52.82 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 398 | 52.82 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 421 | 52.85 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 422 | 52.85 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 447 | 52.87 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 489 | 52.90 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 493 | 52.91 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 536 | 52.94 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 672 | 53.07 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 716 | 53.11 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 770 | 53.16 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 854 | 53.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 895 | 53.25 | humidity | 50 | 43200 | > th | dose independent | sin | 14 | NA |
| 914 | 53.26 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 12 |