BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0515400 Os12g0515400|AK099798
(548 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12860.1 | chr5:4059927-4061919 REVERSE LENGTH=558 727 0.0
AT5G64290.1 | chr5:25714495-25716642 REVERSE LENGTH=564 417 e-116
AT5G64280.1 | chr5:25711330-25713411 REVERSE LENGTH=550 371 e-103
>AT5G12860.1 | chr5:4059927-4061919 REVERSE LENGTH=558
Length = 557
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/470 (77%), Positives = 399/470 (84%)
Query: 79 QGAAIKPLVATIGTGVLIWLVPPPAGVARNAWQLLSIFLATIVGIITQXXXXXXXXXXXX 138
QGAAIKPL+A+I TG+++W VP P GV RNAWQLL+IFLATIVGIITQ
Sbjct: 88 QGAAIKPLLASIATGLILWFVPVPEGVTRNAWQLLAIFLATIVGIITQPLPLGAVALMGL 147
Query: 139 XXXXXTRTLTFAAAFSAFGDPIPWLIALAFFFARGFIKTGLGSRVAYAFVSAFGGSSLGL 198
T+TLTFAAAFSAFGDPIPWLIALAFFFARGFIKTGLG+RVAY FV FG SSLGL
Sbjct: 148 GASVLTKTLTFAAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRVAYQFVRLFGSSSLGL 207
Query: 199 GYALVFAEALLAPAIPSVSARAGGIFLPLVKSLCEACGSRAGDGTERRLGSWLMLTCFQT 258
GY+LVF+EALLAPAIPSVSARAGGIFLPLVKSLC ACGS GDGTE RLGSWLMLTCFQT
Sbjct: 208 GYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTEHRLGSWLMLTCFQT 267
Query: 259 SVISSAMFLTAMAANPLAANLTAGTIGQGIGWTLWAKAAIVPGLLSLVFVPLILYLIYPP 318
SVISS+MFLTAMAANPL+ANL TI Q IGWT WAKAAIVPGL+SL+ VP +LYLIYPP
Sbjct: 268 SVISSSMFLTAMAANPLSANLAFNTIKQTIGWTDWAKAAIVPGLVSLIVVPFLLYLIYPP 327
Query: 319 EVKTSPDAPRLAKERLEKMGPMSKEEKIMAGTLFLTVGLWIFGGMLNVDXXXXXXXXXXX 378
VK+SPDAP+LA+E+L+KMGPMSK E IMA TLFLTVGLWIFG L VD
Sbjct: 328 TVKSSPDAPKLAQEKLDKMGPMSKNELIMAATLFLTVGLWIFGAKLGVDAVTAAILGLSV 387
Query: 379 XXXXXXXTWKECLGEAVAWDTLTWFAALIAMAGYLNKYGLISWFSETVVKFVGGLGLSWQ 438
TWKECL E+VAWDTLTWFAALIAMAGYLNKYGLI WFS+TVVKFVGGLGLSWQ
Sbjct: 388 LLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLIEWFSQTVVKFVGGLGLSWQ 447
Query: 439 LSFGVLVLLYFYSHYFFASGAAHIGAMFTAFLSVSSALGTPPLIAAMVLSFLSNIMGGLT 498
LSFG+LVLLYFY+HYFFASGAAHIGAMFTAFLSVS+ALGTPP AA+VL+FLSN+MGGLT
Sbjct: 448 LSFGILVLLYFYTHYFFASGAAHIGAMFTAFLSVSTALGTPPYFAALVLAFLSNLMGGLT 507
Query: 499 HYGIGSAPVFYGAGYVPLAQWWGYGFVISIVNIIIWLGAGGFWWKMLGLW 548
HYGIGSAP+FYGA YVPLA+WWGYGF+ISIVNI+IWLG GG WWK +GLW
Sbjct: 508 HYGIGSAPIFYGANYVPLAKWWGYGFLISIVNILIWLGVGGAWWKFIGLW 557
>AT5G64290.1 | chr5:25714495-25716642 REVERSE LENGTH=564
Length = 563
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/473 (47%), Positives = 299/473 (63%), Gaps = 4/473 (0%)
Query: 79 QGAAIKPLVATIGTG-VLIWLVPPPAGVARNAWQLLSIFLATIVGIITQXXXXXXXXXXX 137
QGA + PL+ +I G +L + VP P GV WQLLSIFL+TI G++
Sbjct: 92 QGAKLIPLILSISVGLILRFAVPVPEGVTPQGWQLLSIFLSTIAGLVLSPLPVGAWAFIG 151
Query: 138 XXXXXXTRTLTFAAAFSAFGDPIPWLIALAFFFARGFIKTGLGSRVAYAFVSAFGGSSLG 197
T+TL+F+AAFSAF + WLI ++FFFARGF+KTGLG R+A FV G S+LG
Sbjct: 152 LTASIVTKTLSFSAAFSAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLG 211
Query: 198 LGYALVFAEALLAPAIPSVSARAGGIFLPLVKSLCEACGSRAGDGTERRLGSWLMLTCFQ 257
L Y L +EAL+APA+PS +ARAGGIFLP++KSL + GS+ D + R+LGS+L+ + FQ
Sbjct: 212 LSYGLTLSEALIAPAMPSTTARAGGIFLPIIKSLSLSAGSKPNDSSSRKLGSYLIQSQFQ 271
Query: 258 TSVISSAMFLTAMAANPLAANLTAGTIGQGIG--WTLWAKAAIVPGLLSLVFVPLILYLI 315
+ SSA+FLTA A N L L A +G I W W KAA +P ++SL+ PLILY +
Sbjct: 272 CAGNSSALFLTAAAQNLLCLKL-AEELGVVISNPWVSWFKAASLPAIISLLCTPLILYKL 330
Query: 316 YPPEVKTSPDAPRLAKERLEKMGPMSKEEKIMAGTLFLTVGLWIFGGMLNVDXXXXXXXX 375
YPPE K +P+AP +A +L++MGP++K E IM GT+ L V LWI G L +
Sbjct: 331 YPPETKDTPEAPGIAATKLKQMGPVTKNEWIMVGTMLLAVTLWICGETLGIPSVVAAMIG 390
Query: 376 XXXXXXXXXXTWKECLGEAVAWDTLTWFAALIAMAGYLNKYGLISWFSETVVKFVGGLGL 435
W +CL E AWDTL WFA L+ MAG L G+++W S+ V K + L L
Sbjct: 391 LSILLVLGVLNWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGVVTWMSDCVAKVLQSLSL 450
Query: 436 SWQLSFGVLVLLYFYSHYFFASGAAHIGAMFTAFLSVSSALGTPPLIAAMVLSFLSNIMG 495
SW +FG+L YF+ HY FAS H+GA+F+AFL++ A G P ++AA+ L++ +N+ G
Sbjct: 451 SWPAAFGLLQAAYFFIHYLFASQTGHVGALFSAFLAMHIAAGVPGILAALALAYNTNLFG 510
Query: 496 GLTHYGIGSAPVFYGAGYVPLAQWWGYGFVISIVNIIIWLGAGGFWWKMLGLW 548
LTHY G A V+YGAGYV L + GFV++ +N IIW G FWWK LGL+
Sbjct: 511 ALTHYSSGQAAVYYGAGYVDLPDVFKIGFVMATINAIIWGVVGTFWWKFLGLY 563
>AT5G64280.1 | chr5:25711330-25713411 REVERSE LENGTH=550
Length = 549
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/472 (43%), Positives = 283/472 (59%), Gaps = 4/472 (0%)
Query: 80 GAAIKPLVATIGTGVLI-WLVPPPAGVARNAWQLLSIFLATIVGIITQXXXXXXXXXXXX 138
GA + PL ++ G+++ +L+P P V WQLLSIFL TI G++
Sbjct: 79 GAKLIPLAISVSIGLIVRFLIPRPEQVTSQGWQLLSIFLFTISGLVLGPLPVGAWAFIGL 138
Query: 139 XXXXXTRTLTFAAAFSAFGDPIPWLIALAFFFARGFIKTGLGSRVAYAFVSAFGGSSLGL 198
T+TL F+ AF+AF + + WLIA++FFFARGFIKTGLG R+A FV G S+LGL
Sbjct: 139 TASIVTKTLPFSTAFAAFTNELIWLIAISFFFARGFIKTGLGDRIATYFVKWLGKSTLGL 198
Query: 199 GYALVFAEALLAPAIPSVSARAGGIFLPLVKSLCEACGSRAGDGTERRLGSWLMLTCFQT 258
Y L F E L+ +PS ARAGG+FLP++KSL + GS GD + R+LGS+L+ T Q
Sbjct: 199 SYGLAFCETLMGLIMPSTMARAGGVFLPVIKSLAISAGSYPGDPSSRKLGSFLIQTQLQC 258
Query: 259 SVISSAMFLTAMAANPLAANLTAGTIGQGIG--WTLWAKAAIVPGLLSLVFVPLILYLIY 316
S S A+ LT+ A N L L A +G I W W K A VP +SL+ PLI+Y +Y
Sbjct: 259 SGASGAILLTSAAQNLLCLKL-AREVGVVISNPWITWFKVASVPAFVSLLCTPLIIYKLY 317
Query: 317 PPEVKTSPDAPRLAKERLEKMGPMSKEEKIMAGTLFLTVGLWIFGGMLNVDXXXXXXXXX 376
PPE+K +P+AP A ++LE++GP++K E IM G + TV LW+FG + +
Sbjct: 318 PPELKHTPEAPAAAAKKLERLGPITKNEWIMLGAMAFTVSLWVFGEAIGIASVVSAMIGL 377
Query: 377 XXXXXXXXXTWKECLGEAVAWDTLTWFAALIAMAGYLNKYGLISWFSETVVKFVGGLGLS 436
W +CL + AWD+LTWFA LI MAG L G+++W S+ V K + L L+
Sbjct: 378 STLLLLGVINWDDCLSDKSAWDSLTWFAVLIGMAGQLTNLGVVAWMSDCVAKLLQSLSLT 437
Query: 437 WQLSFGVLVLLYFYSHYFFASGAAHIGAMFTAFLSVSSALGTPPLIAAMVLSFLSNIMGG 496
W SF +L Y HY FAS H GA++ FL++ A G P ++AA+ L+F +N+ G
Sbjct: 438 WPASFIILQACYLLIHYLFASQTGHAGALYPPFLAMQIAAGVPGVLAALCLAFNNNLSGA 497
Query: 497 LTHYGIGSAPVFYGAGYVPLAQWWGYGFVISIVNIIIWLGAGGFWWKMLGLW 548
L HY G A ++YGAGYV L + GFV+++V IIW G G FWWK LGL+
Sbjct: 498 LAHYSGGPAALYYGAGYVDLRDMFRVGFVMALVQAIIWGGVGSFWWKFLGLY 549
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.141 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,748,191
Number of extensions: 371956
Number of successful extensions: 1178
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1167
Number of HSP's successfully gapped: 3
Length of query: 548
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 445
Effective length of database: 8,282,721
Effective search space: 3685810845
Effective search space used: 3685810845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 114 (48.5 bits)