Os12g0514600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sterile alpha motif homology domain containing protein.
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Os12g0514600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sterile alpha motif homology domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.37 | 0.271 | 12.3 | -1.27 | 0.313 | 0.427 | -0.235 | -5.7 | -0.139 | 0.727 | 25.88 | 3641 | -- | -- |
| 37.81 | 0.286 | 12.1 | 0.0732 | 0.321 | -0.377 | -0.358 | -- | 0.294 | 0.602 | 30.83 | 17787 | -- | -- |
| 33.59 | 0.27 | 12.3 | -1.26 | 0.31 | 0.401 | -- | -5.56 | -0.147 | 0.905 | 25.58 | 3653 | -- | -- |
| 38.18 | 0.288 | 12.1 | 0.112 | 0.334 | -0.381 | -- | -- | 0.28 | 0.608 | 31.79 | 19305 | -- | -- |
| 39.53 | 0.293 | 12.3 | -1.25 | -- | 0.458 | -- | -5.45 | -0.148 | -- | 25.37 | 3641 | -- | -- |
| 40.81 | 0.3 | 12.2 | -0.0843 | 0.311 | -- | -0.4 | -- | 0.103 | 0.283 | -- | -- | -- | -- |
| 41.47 | 0.302 | 12.2 | -0.0695 | 0.313 | -- | -- | -- | 0.104 | 0.601 | -- | -- | -- | -- |
| 44.82 | 0.312 | 12.1 | 0.0958 | -- | -0.38 | -- | -- | 0.266 | -- | 31.68 | 19154 | -- | -- |
| 38.25 | 0.288 | 12.1 | -- | 0.32 | -0.347 | -- | -- | 0.242 | 0.64 | 31.74 | 19249 | -- | -- |
| 47.63 | 0.322 | 12.2 | -0.0584 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 41.6 | 0.302 | 12.2 | -- | 0.312 | -- | -- | -- | 0.112 | 0.59 | -- | -- | -- | -- |
| 44.88 | 0.312 | 12.1 | -- | -- | -0.313 | -- | -- | 0.233 | -- | 31.44 | 19172 | -- | -- |
| 47.72 | 0.322 | 12.2 | -- | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 2 | 32.06 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 4 | 32.24 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 5 | 32.29 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 6 | 32.41 | temperature | 10 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 8 | 32.42 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 9 | 32.43 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 13 | 32.44 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 16 | 32.47 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 17 | 32.47 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 20 | 32.48 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 23 | 32.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 30 | 32.50 | temperature | 15 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 33 | 32.50 | temperature | 10 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 45 | 32.52 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 75 | 32.55 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 99 | 32.57 | temperature | 10 | 14400 | > th | dose dependent | sin | 4 | NA |
| 123 | 32.58 | temperature | 30 | 14400 | < th | dose dependent | rect. | 2 | 12 |
| 164 | 32.61 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 187 | 32.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 233 | 32.64 | temperature | 30 | 14400 | < th | dose dependent | sin | 4 | NA |
| 254 | 32.65 | temperature | 25 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 276 | 32.66 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 277 | 32.66 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 520 | 32.77 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 541 | 32.77 | temperature | 10 | 14400 | > th | dose dependent | rect. | 7 | 21 |
| 593 | 32.78 | temperature | 10 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 691 | 32.81 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 762 | 32.82 | temperature | 30 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 763 | 32.82 | temperature | 30 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 772 | 32.83 | temperature | 30 | 14400 | < th | dose dependent | no | NA | NA |
| 954 | 32.88 | temperature | 15 | 14400 | > th | dose dependent | rect. | 20 | 1 |