BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0514600 Os12g0514600|AK073732
         (125 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07760.1  | chr3:2476723-2477947 FORWARD LENGTH=126            229   2e-61

>AT3G07760.1 | chr3:2476723-2477947 FORWARD LENGTH=126
          Length = 125

 Score =  229 bits (585), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/124 (88%), Positives = 116/124 (93%)

Query: 1   MSRGRSPEPLDFFIWTVEDVGLWLEEINLGSYRQVFEENGVNGEYLESLSMFTTEQILRF 60
           M+R   PEPLDFFIWTVEDVG WLEEINLG YRQ+F+ENGVNGEYLES+S+FTTEQIL F
Sbjct: 1   MTREHPPEPLDFFIWTVEDVGSWLEEINLGGYRQIFKENGVNGEYLESMSVFTTEQILHF 60

Query: 61  IRRCHMKWGDFITLCKELRRIKVACLKGEQEVRRPWWAPSCLSVVFVRAAKRNRQSRVVS 120
           IRR HMKWGDFITLCKELRRIKVACLKGEQ VRRPWWAPSCLSVVFV+AAKRNRQSRVVS
Sbjct: 61  IRRHHMKWGDFITLCKELRRIKVACLKGEQRVRRPWWAPSCLSVVFVKAAKRNRQSRVVS 120

Query: 121 LKLE 124
           LKLE
Sbjct: 121 LKLE 124



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,794,946
Number of extensions: 105961
Number of successful extensions: 328
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)