FiT-DB / Search/ Help/ Sample detail

Os12g0514400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Potyvirus VPg interacting protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0162) R2 : 0.103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.246 (0.0341) R2dN8 : 0.133 R2N8 : 0.103
σ : 0.305
deviance : 42.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.75 0.18 13 0.658 0.618 -1.33 1.05 -0.972 0.346 19 1.5 725 -- --
15.05 0.181 13 0.656 0.619 -1.35 0.419 -- 0.351 19.2 1.63 734 -- --
15.4 0.183 13 0.673 0.589 -1.31 -- 0.267 0.363 19.3 1.81 737 -- --
15.15 0.181 13 0.662 0.511 -1.2 -- -- 0.359 20.4 1.87 786 -- --
17.33 0.194 13 0.728 -- -0.583 -- 0.0941 0.394 -- 10.01 504 -- --
18.69 0.203 13 0.595 0.506 -- 0.11 -- 0.302 4.15 -- -- -- --
18.72 0.203 13 0.594 0.507 -- -- -- 0.301 4.19 -- -- -- --
17.16 0.193 13 0.644 -- -0.572 -- -- 0.372 -- 10.01 481 -- --
25.36 0.235 13 -- 0.3 -0.901 -- -- 0.29 20.6 7.808 736 -- --
32.65 0.267 13 0.614 -- -- -- -- 0.314 -- -- -- -- --
28.01 0.248 13 -- 0.519 -- -- -- 0.235 4.17 -- -- -- --
25.28 0.234 13 -- -- -0.587 -- -- 0.278 -- 8.385 493 -- --
42.59 0.305 13 -- -- -- -- -- 0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.73 radiation 10 720 < th dose dependent rect. 14 18
2 14.73 humidity 70 90 > th dose dependent rect. 3 23
3 14.76 humidity 60 90 > th dose dependent rect. 13 23
5 14.80 humidity 60 90 > th dose dependent rect. 10 23
10 14.84 radiation 1 720 > th dose independent rect. 7 23
11 14.88 humidity 80 720 > th dose independent rect. 9 13
14 14.91 humidity 60 90 > th dose dependent rect. 15 23
16 14.91 radiation 1 720 < th dose dependent rect. 19 23
17 14.92 radiation 10 720 < th dose dependent rect. 5 17
18 14.92 humidity 50 720 > th dose dependent rect. 18 21
21 14.93 radiation 1 720 < th dose independent rect. 5 17
22 14.93 humidity 70 720 > th dose dependent rect. 9 13
26 14.93 humidity 60 90 > th dose dependent rect. 19 23
28 14.95 radiation 1 720 < th dose independent rect. 3 23
29 14.95 humidity 60 90 > th dose dependent no NA NA
40 14.97 radiation 1 720 > th dose independent rect. 15 23
42 14.98 humidity 50 720 > th dose dependent rect. 10 12
48 14.98 radiation 10 720 < th dose dependent rect. 10 22
78 15.03 radiation 1 720 < th dose dependent rect. 3 23
79 15.04 radiation 1 720 < th dose independent rect. 19 23
85 15.05 humidity 70 1440 > th dose independent rect. 10 5
86 15.05 temperature 20 10 > th dose dependent rect. 9 11
95 15.06 radiation 10 720 < th dose dependent sin 13 NA
103 15.07 humidity 70 90 > th dose dependent rect. 5 18
119 15.09 humidity 80 1440 < th dose independent rect. 9 6
120 15.09 humidity 80 1440 < th dose independent rect. 8 10
130 15.10 humidity 80 1440 < th dose independent sin 0 NA
131 15.10 humidity 80 1440 < th dose independent rect. 8 8
132 15.10 humidity 80 1440 < th dose independent rect. 8 12
142 15.11 humidity 70 90 > th dose dependent rect. 5 20
149 15.12 humidity 70 1440 > th dose dependent rect. 10 4
164 15.14 radiation 1 720 > th dose independent sin 0 NA
165 15.14 radiation 20 1440 > th dose independent rect. 9 5
180 15.15 humidity 80 1440 > th dose independent sin 23 NA
182 15.15 radiation 1 720 < th dose independent sin 23 NA
184 15.15 radiation 1 720 < th dose independent rect. 13 19
197 15.16 radiation 20 1440 < th dose independent rect. 13 1
199 15.16 radiation 1 720 > th dose independent rect. 7 12
215 15.16 humidity 50 720 > th dose dependent rect. 13 18
222 15.16 radiation 10 720 < th dose dependent rect. 14 22
236 15.18 radiation 1 720 > th dose independent no NA NA
241 15.18 radiation 1 720 > th dose independent rect. 5 14
256 15.18 humidity 80 720 > th dose independent rect. 3 19
309 15.19 radiation 20 1440 > th dose independent rect. 9 7
310 15.19 humidity 80 1440 > th dose independent rect. 8 10
327 15.20 humidity 80 1440 < th dose independent rect. 10 4
337 15.20 radiation 10 720 < th dose dependent rect. 14 9
365 15.21 radiation 20 270 < th dose dependent rect. 1 23
366 15.22 radiation 20 1440 > th dose independent rect. 13 1
382 15.22 radiation 1 720 > th dose independent rect. 16 18
387 15.22 radiation 1 720 < th dose dependent sin 23 NA
400 15.22 humidity 60 720 > th dose dependent rect. 13 23
405 15.23 radiation 1 720 < th dose independent no NA NA
446 15.24 humidity 70 1440 > th dose dependent rect. 9 6
463 15.25 humidity 70 1440 > th dose independent rect. 13 1
479 15.25 humidity 70 1440 > th dose dependent rect. 11 2
521 15.26 humidity 50 720 > th dose dependent sin 16 NA
541 15.27 humidity 70 1440 < th dose independent rect. 13 2
588 15.28 radiation 1 720 < th dose independent rect. 7 23
644 15.29 radiation 10 720 < th dose dependent no NA NA
645 15.29 humidity 60 720 > th dose dependent rect. 19 3
649 15.29 humidity 50 720 > th dose dependent rect. 13 9
675 15.30 humidity 90 270 < th dose independent sin 22 NA
693 15.30 humidity 70 720 > th dose dependent sin 20 NA
763 15.32 radiation 20 1440 > th dose independent sin 21 NA
857 15.34 radiation 1 720 < th dose independent rect. 14 8
907 15.34 radiation 1 270 > th dose dependent rect. 14 23
911 15.35 radiation 1 720 < th dose independent sin 13 NA
942 15.35 radiation 20 1440 > th dose independent rect. 15 23