Os12g0501700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor, MADS-box domain containing protein.
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Os12g0501700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor, MADS-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 369.01 | 0.903 | 5.15 | -3.37 | 3.14 | 1.49 | -2.9 | -1.33 | -0.935 | 1.49 | 21.2 | 583 | -- | -- |
| 374.79 | 0.902 | 5.12 | -3.05 | 3.15 | 1.56 | -3.01 | -- | -0.87 | 1.48 | 21.3 | 578 | -- | -- |
| 400.86 | 0.932 | 5.15 | -3.36 | 3.05 | 1.57 | -- | -1.72 | -0.927 | 1.62 | 21.2 | 674 | -- | -- |
| 409.72 | 0.943 | 5.11 | -2.97 | 3.16 | 1.62 | -- | -- | -0.877 | 1.63 | 21.2 | 578 | -- | -- |
| 942.47 | 1.43 | 5.18 | -3.58 | -- | 2.14 | -- | -1.79 | -1.15 | -- | 21.89 | 901 | -- | -- |
| 462.43 | 1.01 | 5.03 | -2.5 | 3.2 | -- | -3.3 | -- | -0.44 | 1.15 | -- | -- | -- | -- |
| 506.92 | 1.05 | 5.02 | -2.39 | 3.21 | -- | -- | -- | -0.424 | 1.29 | -- | -- | -- | -- |
| 917.27 | 1.41 | 5.22 | -3.03 | -- | 2.44 | -- | -- | -1.26 | -- | 24.78 | 968 | -- | -- |
| 616.13 | 1.16 | 5 | -- | 3.25 | 1.02 | -- | -- | -0.443 | 1.4 | 21.4 | 312 | -- | -- |
| 1144.81 | 1.58 | 4.97 | -2.26 | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
| 657.16 | 1.2 | 4.96 | -- | 3.17 | -- | -- | -- | -0.159 | 1.26 | -- | -- | -- | -- |
| 1146.69 | 1.58 | 5.05 | -- | -- | 2.05 | -- | -- | -0.792 | -- | 25 | 989 | -- | -- |
| 1279.81 | 1.67 | 4.91 | -- | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 360.32 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 2 | 360.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 3 | 361.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 4 | 361.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 24 | 363.95 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 143 | 369.99 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 207 | 372.52 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 15 |
| 224 | 373.06 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 11 |
| 260 | 374.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 295 | 374.89 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 306 | 375.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 309 | 375.25 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 358 | 376.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 389 | 377.50 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 8 |
| 409 | 377.79 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 532 | 380.65 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 21 |
| 536 | 380.70 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 19 |
| 630 | 382.35 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 22 |
| 648 | 382.60 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 697 | 383.28 | temperature | 20 | 720 | < th | dose independent | sin | 13 | NA |
| 703 | 383.31 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 23 |
| 705 | 383.34 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 22 |
| 732 | 383.73 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 23 |
| 733 | 383.73 | temperature | 15 | 30 | > th | dose dependent | sin | 8 | NA |
| 753 | 383.99 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 758 | 384.03 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 3 |
| 772 | 384.25 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 790 | 384.52 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 853 | 385.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 993 | 386.64 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 8 |
| 997 | 386.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 3 |