Os12g0491400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0491400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 269.52 | 0.771 | 5.97 | -2.49 | 0.945 | -1.83 | -0.506 | -0.754 | 0.573 | 1.41 | 1010 | 5622 | -- | -- |
| 270.9 | 0.767 | 5.98 | -2.6 | 0.937 | -1.78 | -0.486 | -- | 0.552 | 1.41 | 1010 | 5495 | -- | -- |
| 270.49 | 0.766 | 5.97 | -2.46 | 0.955 | -1.84 | -- | -0.739 | 0.581 | 1.52 | 1010 | 5584 | -- | -- |
| 271.75 | 0.768 | 5.99 | -2.64 | 0.946 | -1.78 | -- | -- | 0.548 | 1.57 | 1010 | 5529 | -- | -- |
| 324.87 | 0.839 | 5.95 | -2.42 | -- | -1.89 | -- | -0.77 | 0.619 | -- | 1009 | 5403 | -- | -- |
| 350.48 | 0.878 | 5.91 | -2.07 | 0.976 | -- | -0.494 | -- | 0.902 | 1.58 | -- | -- | -- | -- |
| 351.39 | 0.878 | 5.91 | -2.06 | 0.979 | -- | -- | -- | 0.904 | 1.72 | -- | -- | -- | -- |
| 326.21 | 0.841 | 5.98 | -2.59 | -- | -1.84 | -- | -- | 0.572 | -- | 1009 | 5340 | -- | -- |
| 424.14 | 0.959 | 5.89 | -- | 0.903 | -1.43 | -- | -- | 0.959 | 1.5 | 1014 | 4372 | -- | -- |
| 409.68 | 0.946 | 5.89 | -2.02 | -- | -- | -- | -- | 0.926 | -- | -- | -- | -- | -- |
| 462.8 | 1.01 | 5.85 | -- | 0.942 | -- | -- | -- | 1.13 | 1.66 | -- | -- | -- | -- |
| 474.56 | 1.01 | 5.88 | -- | -- | -1.47 | -- | -- | 0.997 | -- | 1014 | 4287 | -- | -- |
| 516.9 | 1.06 | 5.84 | -- | -- | -- | -- | -- | 1.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 266.85 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 12 | 7 |
| 2 | 266.86 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 4 | 266.88 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 5 | 266.92 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 18 | 267.45 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 87 | 268.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 99 | 268.96 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 101 | 268.96 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 115 | 269.17 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 117 | 269.18 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 129 | 269.36 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 133 | 269.38 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 134 | 269.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 135 | 269.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 141 | 269.52 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 153 | 269.65 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 171 | 269.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 206 | 270.13 | atmosphere | 1010.0 | 14400 | > th | dose dependent | sin | 20 | NA |
| 219 | 270.26 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 221 | 270.29 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 261 | 270.53 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 263 | 270.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 266 | 270.59 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 267 | 270.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 270 | 270.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 272 | 270.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 291 | 270.71 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 356 | 271.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 404 | 271.25 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 436 | 271.35 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 440 | 271.36 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 19 | 21 |
| 444 | 271.37 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 479 | 271.43 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 489 | 271.48 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 519 | 271.52 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 539 | 271.56 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 545 | 271.57 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 570 | 271.62 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 584 | 271.64 | atmosphere | 1015.0 | 14400 | < th | dose independent | no | NA | NA |
| 593 | 271.65 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 594 | 271.65 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 602 | 271.66 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 607 | 271.67 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 620 | 271.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 634 | 271.73 | atmosphere | 1015.0 | 14400 | > th | dose independent | no | NA | NA |
| 656 | 271.76 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 685 | 271.80 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 714 | 271.84 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 721 | 271.84 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 15 |
| 724 | 271.85 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 873 | 272.08 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 21 |
| 884 | 272.10 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 893 | 272.11 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 899 | 272.12 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 10 | 21 |
| 957 | 272.20 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 20 |
| 960 | 272.21 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 14 |
| 961 | 272.21 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 968 | 272.22 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 12 |