BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0491400 Os12g0491400|Os12g0491400
(280 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09510.1 | chr3:2921804-2923258 FORWARD LENGTH=485 76 2e-14
AT1G33710.1 | chr1:12219657-12220289 FORWARD LENGTH=211 57 9e-09
AT4G29090.1 | chr4:14333528-14335255 FORWARD LENGTH=576 55 4e-08
AT2G02650.1 | chr2:735411-736546 FORWARD LENGTH=366 54 9e-08
AT4G10613.1 | chr4:6561039-6561479 FORWARD LENGTH=147 53 2e-07
AT3G25270.1 | chr3:9203934-9204965 REVERSE LENGTH=344 49 4e-06
AT1G60720.1 | chr1:22357072-22357941 FORWARD LENGTH=290 48 5e-06
AT2G02520.1 | chr2:676771-678145 REVERSE LENGTH=212 48 7e-06
>AT3G09510.1 | chr3:2921804-2923258 FORWARD LENGTH=485
Length = 484
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 28/227 (12%)
Query: 55 FWESAWIVDLVEQLVALWEAVRNVHL-DVGEPDQITWKFTNNGHYTASSAY----HAQCC 109
FW+ + I V+Q + + ++L +PD+I W + G YT S Y H
Sbjct: 87 FWDDSKISQFVDQ--SDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPST 144
Query: 110 GAPSTN-------FNSLIWKPWAPGKCKFHAWLIIQNRVWTLDRLATRGWQNNGCCPLCR 162
P+ N + IW K K W + + T +RL TRG + + CP C
Sbjct: 145 NIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCH 204
Query: 163 RETETALHHVATCRYTKRIWHLVSAWVGYQQMDPTEWEEAQSVKQWWENIANTPSVPKKG 222
RE E+ H + TC + W L + + Q+ ++E ENI+N + +
Sbjct: 205 RENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFE---------ENISNILNFVQDT 255
Query: 223 LRS-----LILLVVWEIWKERNRRIFDHKEVATNFLLMKIKEEASLW 264
S L + ++W IWK RN +F+ + + ++ K E W
Sbjct: 256 TMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDW 302
>AT1G33710.1 | chr1:12219657-12220289 FORWARD LENGTH=211
Length = 210
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 120 IWKPWAPGKCKFHAWLIIQNRVWTLDRLATRGWQNNGCCPLCRRETETALHHVATCRYTK 179
+W A K FH W+ +R+ T RLA+ G Q C LC + E H TC +
Sbjct: 52 VWFKGATPKHAFHMWVTNLDRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLFLTCEFAC 111
Query: 180 RIWHLVSAWVGYQQMDPTEWEEAQSVKQWWENIANTPSVPKKGLRSLILL-VVWEIWKER 238
+WH VS + W + W N S P LR LI+ V++ IWK+R
Sbjct: 112 FLWHTVSVRLELPAFSFVVWNDLMD----WTLQRNRRSPPT--LRKLIVQSVLYAIWKQR 165
Query: 239 NRRIFDHKEVATNFLLMKIKEE 260
N + +H+ + + + I E
Sbjct: 166 NNFLHNHETILPSVVFKTIDRE 187
>AT4G29090.1 | chr4:14333528-14335255 FORWARD LENGTH=576
Length = 575
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 18/194 (9%)
Query: 86 DQITWKFTNNGHYTASSAY-----------HAQCCGAPSTN-FNSLIWKPWAPGKCKFHA 133
D TW +T++G YT S Y Q PS N IWK K +
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFL 270
Query: 134 WLIIQNRVWTLDRLATRGWQNNGCCPLCRRETETALHHVATCRYTKRIWHLVSAWVGYQQ 193
W + N + LA R C C ET H + C + + W + S +
Sbjct: 271 WKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLG- 329
Query: 194 MDPTEWEEAQSVKQWWE-NIANTPSVPKKGLRSLILLVVWEIWKERNRRIFDHKEVATNF 252
EW ++ V +W N+ N +K L+ ++W +WK RN +F +E
Sbjct: 330 ---GEWADSIYVNLYWVFNLGNGNPQWEKA-SQLVPWLLWRLWKNRNELVFRGREFNAQE 385
Query: 253 LLMKIKEEASLWAL 266
+L + +++ W +
Sbjct: 386 VLRRAEDDLEEWRI 399
>AT2G02650.1 | chr2:735411-736546 FORWARD LENGTH=366
Length = 365
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 4/156 (2%)
Query: 113 STNFNSLIWKPWAPGKCKFHAWLIIQNRVWTLDRLATRGWQNNGCCPLCRRETETALHHV 172
ST IWK K K W + + T RL +R + C C E ET H +
Sbjct: 30 STEVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIM 89
Query: 173 ATCRYTKRIWHLVSAWVGYQQMDPTEWEEAQSVKQWWENIANTPSVPKKGLRSLILLVVW 232
C YT+ +W + +G Q P+ +E+ + T S+ R L ++W
Sbjct: 90 FNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLD----RFLPFWIMW 145
Query: 233 EIWKERNRRIFDHKEVATNFLLMKIKEEASLWALAG 268
+WK RN +F K + ++ K ++A+ W A
Sbjct: 146 RLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNAN 181
>AT4G10613.1 | chr4:6561039-6561479 FORWARD LENGTH=147
Length = 146
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 13/124 (10%)
Query: 144 LDRLATR------GWQNNGCCPLCRRETETALHHVATCRYTKRIWHLVSAWVGYQQMDPT 197
LDRL TR G Q + C LC + ET H + TC ++ IW++V A + Q +
Sbjct: 6 LDRLPTRARLVSWGLQISPLCCLCSQSVETRDHLILTCGFSSSIWNMVQARLRLQPVQFR 65
Query: 198 EWEEAQSVKQWWE-NIANTPSVPKKGLRSLILLVVWEIWKERNRRIFDHKEVATNFLLMK 256
WE S+ W + + A++PS+ +K + V IWK+RN + + +++ + +
Sbjct: 66 VWE---SLLSWIKLSTASSPSIIRKLVAQ---ATVCAIWKQRNNLLHNLQDILPSIIFKN 119
Query: 257 IKEE 260
I E
Sbjct: 120 IDRE 123
>AT3G25270.1 | chr3:9203934-9204965 REVERSE LENGTH=344
Length = 343
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 120 IWKPWAPGKCKFHAWLIIQNRVWTLDRLATRGWQNNGCCPLCRRETETALHHVATCRYTK 179
IWK K K W ++ + T D L R +N+ C C +E ET+ H C Y +
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 180 RIWHLVSAWVGYQQMDPTEWEEAQSVKQWWENIANTPSVPKKGLRSLILLVVWEIWKERN 239
++W ++ + +Q++ T ++ +++ + + L +L + ++W +WK RN
Sbjct: 78 QVWR--ASGIPHQELRTTGITMETKMELL---LSSCLANRQPQLFNLAIWILWRLWKSRN 132
Query: 240 RRIFDHKEVATNFLLMKIKEEASLW 264
+ +F K ++ L + + + W
Sbjct: 133 QLVFQQKSISWQNTLQRARNDVQEW 157
>AT1G60720.1 | chr1:22357072-22357941 FORWARD LENGTH=290
Length = 289
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 5/163 (3%)
Query: 98 YTASSAYHAQCCGAPSTNFNSLIWKPWAPGKCKFHAWLIIQNRVWTLDRLATRGWQNNGC 157
++++ + A AP ++ +W A K F+ W+ +R+ T RLA+ G +
Sbjct: 109 FSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFD 168
Query: 158 CPLCRRETETALHHVATCRYTKRIWHLVSAWVGYQQMDPTEWEEAQSVKQWWENIANTPS 217
C LC ETE+ H + +C + ++W L + + +Q W E S + + ++ PS
Sbjct: 169 CCLCTIETESRDHLLFSCEFAAQVWRLAFSRLCPRQRLFCSWAELLSWMR--SSSSSAPS 226
Query: 218 VPKKGLRSLILLVVWEIWKERNRRIFDHKEVATNFLLMKIKEE 260
+ +K I ++ IW++RN + ++ +A + + E
Sbjct: 227 LLRKVSAHAI---IYNIWRQRNNVLHNNLRIAPIIIFKIVDRE 266
>AT2G02520.1 | chr2:676771-678145 REVERSE LENGTH=212
Length = 211
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 120 IWKPWAPGKCKFHAWLIIQNRVWTLDRLATRGWQNNGCCPLCRRETETALHHVATCRYTK 179
IW K F AW+ +++R+ T DR+ + G+ C C ET H C + +
Sbjct: 47 IWFKGKIPKHAFIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFDCEFAR 106
Query: 180 RIWHLVSAWVGYQQMDPTEWEEAQSVKQWWENIANTPSVPKKGLRSLILLVVWEIWKERN 239
+W ++ V P +E+ +W +N +V LR V+ IWKERN
Sbjct: 107 EVWIYFTSRV--HVFPPLLFEDG---IRWLKNPCQDKNV-TTILRLSHHASVYTIWKERN 160
Query: 240 RRIFDHKEVATNFLLMKIKE--EASLWALAGAKRL 272
R+ D L+++IK L L+ A+RL
Sbjct: 161 ARLHDSASRPAAALILEIKSVIRCHLDPLSRAQRL 195
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,942,822
Number of extensions: 285428
Number of successful extensions: 740
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 733
Number of HSP's successfully gapped: 9
Length of query: 280
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 183
Effective length of database: 8,447,217
Effective search space: 1545840711
Effective search space used: 1545840711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)