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Os12g0488800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA polymerase II, RPB4 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0208) R2 : 0.222
β1 : -0.854 (0.0761) R2dD : 0.223 R2D : 0.222
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00573 (0.0444) R2dN8 : 3.81e-05 R2N8 : -0.000946
σ : 0.39
deviance : 69.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.03 0.349 10.8 -1.04 0.391 -0.585 0.246 0.423 -0.125 19.5 24.7 46 -- --
55.36 0.347 10.8 -0.99 0.384 -0.593 0.274 -- -0.106 19.5 24.7 46 -- --
55.16 0.349 10.8 -1.06 0.401 -0.56 -- 0.516 -0.124 19.4 24.7 48 -- --
55.54 0.347 10.8 -0.988 0.391 -0.617 -- -- -0.112 19.4 24.7 46 -- --
60.65 0.363 10.8 -1.14 -- -0.666 -- 0.682 -0.18 -- 28.5 220 -- --
61.02 0.366 10.8 -0.842 0.408 -- 0.124 -- 0.00246 18.4 -- -- -- --
61.05 0.366 10.8 -0.843 0.409 -- -- -- 0.00301 18.4 -- -- -- --
61.22 0.364 10.8 -1.03 -- -0.693 -- -- -0.15 -- 28.1 221 -- --
78.76 0.416 10.7 -- 0.418 -0.276 -- -- 0.0664 18.6 23.1 10 -- --
69.74 0.39 10.7 -0.854 -- -- -- -- -0.00573 -- -- -- -- --
79.79 0.418 10.7 -- 0.421 -- -- -- 0.0969 18.2 -- -- -- --
86.46 0.433 10.7 -- -- -0.35 -- -- 0.0293 -- 29.12 181 -- --
88.97 0.44 10.7 -- -- -- -- -- 0.089 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.37 temperature 20.0 90 > th dose independent rect. 8 20
2 45.54 temperature 10.0 10 > th dose dependent rect. 9 20
3 46.00 temperature 10.0 90 > th dose dependent rect. 8 20
7 46.16 temperature 10.0 270 > th dose dependent rect. 17 9
8 46.31 temperature 15.0 90 > th dose dependent rect. 20 8
11 46.35 temperature 15.0 10 > th dose dependent rect. 20 9
12 46.39 temperature 20.0 90 > th dose independent rect. 20 8
32 47.20 temperature 20.0 10 > th dose independent rect. 20 9
50 47.85 temperature 10.0 10 > th dose dependent rect. 9 17
71 48.33 temperature 30.0 90 < th dose dependent rect. 15 17
101 49.04 atmosphere 1015.0 270 < th dose independent rect. 6 21
113 49.25 atmosphere 1015.0 10 < th dose independent rect. 9 20
114 49.26 atmosphere 1015.0 90 < th dose independent rect. 8 20
146 49.67 temperature 20.0 90 > th dose independent rect. 20 18
179 50.01 atmosphere 1015.0 270 < th dose independent rect. 17 9
192 50.12 atmosphere 1015.0 10 < th dose independent rect. 20 9
222 50.37 wind 9.0 270 < th dose dependent rect. 3 3
234 50.47 precipitation 0.1 270 < th dose independent rect. 3 3
237 50.47 precipitation 0.1 270 < th dose dependent rect. 3 3
243 50.50 temperature 15.0 90 > th dose dependent rect. 20 18
245 50.52 wind 1.0 10 > th dose independent rect. 9 5
256 50.56 precipitation 0.1 270 < th dose independent rect. 6 21
258 50.56 precipitation 0.1 270 < th dose dependent rect. 6 21
260 50.58 temperature 10.0 10 > th dose independent rect. 9 5
262 50.58 atmosphere 995.0 10 > th dose independent rect. 9 5
263 50.58 atmosphere 1015.0 10 < th dose independent rect. 9 5
264 50.58 precipitation 0.1 10 < th dose independent rect. 9 5
266 50.58 temperature 10.0 10 > th dose independent rect. 14 19
267 50.58 precipitation 0.1 10 < th dose dependent rect. 9 5
268 50.59 wind 3.0 270 < th dose independent rect. 3 3
275 50.60 humidity 50.0 90 > th dose independent rect. 14 18
282 50.61 precipitation 0.1 270 < th dose independent rect. 17 10
285 50.61 precipitation 0.1 270 < th dose dependent rect. 17 10
287 50.63 precipitation 0.1 10 < th dose independent rect. 5 4
288 50.63 precipitation 0.1 90 < th dose independent rect. 8 20
289 50.63 precipitation 0.1 10 < th dose dependent rect. 5 4
290 50.63 precipitation 0.1 90 < th dose dependent rect. 8 20
291 50.64 temperature 10.0 1440 > th dose independent rect. 10 5
294 50.64 temperature 10.0 1440 > th dose independent rect. 15 19
298 50.65 wind 9.0 30 < th dose independent rect. 14 19
299 50.65 atmosphere 995.0 10 > th dose independent rect. 9 20
300 50.65 precipitation 0.1 10 < th dose independent rect. 9 20
303 50.65 precipitation 0.1 10 < th dose dependent rect. 9 20
305 50.66 temperature 10.0 270 > th dose independent rect. 3 3
307 50.66 temperature 30.0 270 < th dose independent rect. 3 3
308 50.66 humidity 50.0 270 > th dose independent rect. 3 3
311 50.66 atmosphere 995.0 270 > th dose independent rect. 3 3
312 50.66 atmosphere 1015.0 270 < th dose independent rect. 3 3
313 50.66 radiation 20.0 270 < th dose independent rect. 3 3
318 50.68 wind 7.0 10 < th dose independent rect. 5 4
320 50.68 temperature 10.0 10 > th dose independent rect. 5 4
322 50.68 temperature 30.0 10 < th dose independent rect. 5 4
323 50.68 humidity 50.0 10 > th dose independent rect. 5 4
325 50.68 atmosphere 995.0 10 > th dose independent rect. 5 4
326 50.68 atmosphere 1015.0 10 < th dose independent rect. 5 4
327 50.68 radiation 10.0 270 < th dose independent rect. 17 10
334 50.71 temperature 10.0 270 > th dose independent rect. 17 10
338 50.71 temperature 10.0 270 > th dose independent rect. 3 14
339 50.71 atmosphere 1015.0 270 < th dose independent rect. 3 14
340 50.71 precipitation 0.1 270 < th dose independent rect. 3 14
341 50.71 precipitation 0.1 270 < th dose dependent rect. 3 14
342 50.72 radiation 1.0 10 > th dose independent rect. 9 5
343 50.72 wind 9.0 270 < th dose independent rect. 17 10
353 50.74 humidity 50.0 30 > th dose independent rect. 9 5
356 50.74 temperature 10.0 10 > th dose dependent rect. 5 4
364 50.76 radiation 40.0 270 < th dose dependent rect. 3 3
379 50.78 atmosphere 995.0 90 > th dose independent rect. 8 20
384 50.80 wind 9.0 30 < th dose independent rect. 9 5
387 50.80 temperature 10.0 90 > th dose dependent rect. 4 4
391 50.82 wind 9.0 270 < th dose independent rect. 6 21
392 50.82 wind 9.0 10 < th dose dependent rect. 5 4
395 50.83 wind 9.0 270 < th dose independent rect. 3 14
400 50.85 temperature 10.0 10 > th dose dependent rect. 9 5
402 50.86 wind 9.0 10 < th dose independent rect. 9 20
403 50.86 humidity 50.0 270 > th dose dependent rect. 3 3
407 50.87 radiation 40.0 30 < th dose independent rect. 14 19
412 50.87 atmosphere 995.0 10 > th dose dependent rect. 14 19
417 50.89 precipitation 0.1 30 < th dose independent rect. 14 19
418 50.89 precipitation 0.1 30 < th dose dependent rect. 14 19
421 50.90 wind 9.0 90 < th dose independent rect. 8 20
427 50.93 humidity 90.0 10 < th dose independent rect. 9 5
435 50.95 radiation 40.0 270 < th dose dependent rect. 17 10
449 50.99 radiation 40.0 10 < th dose independent rect. 5 4
509 51.13 radiation 1.0 10 > th dose independent rect. 5 4
527 51.15 temperature 10.0 270 > th dose dependent rect. 4 2
622 51.31 temperature 10.0 270 > th dose dependent rect. 18 18
640 51.36 atmosphere 995.0 270 > th dose independent rect. 17 10
647 51.37 humidity 50.0 270 > th dose independent rect. 17 10
654 51.38 radiation 1.0 270 > th dose independent rect. 9 1
675 51.40 humidity 50.0 270 > th dose independent rect. 9 1
690 51.41 atmosphere 995.0 10 > th dose independent rect. 14 19
692 51.41 radiation 1.0 270 < th dose dependent rect. 4 1
695 51.42 wind 9.0 270 < th dose independent rect. 9 1
696 51.42 temperature 15.0 270 > th dose independent rect. 9 1
697 51.42 precipitation 0.1 270 < th dose independent rect. 9 1
703 51.42 precipitation 0.1 270 < th dose dependent rect. 9 1
711 51.44 precipitation 0.1 270 < th dose independent rect. 2 5
715 51.44 precipitation 0.1 270 < th dose dependent rect. 2 5
719 51.45 atmosphere 995.0 270 > th dose independent rect. 9 1
720 51.45 atmosphere 1015.0 270 < th dose independent rect. 9 1
723 51.45 temperature 10.0 270 > th dose independent rect. 10 23
725 51.45 temperature 10.0 270 > th dose dependent rect. 20 15
739 51.48 wind 5.0 270 < th dose independent rect. 2 5
770 51.52 atmosphere 995.0 270 > th dose independent rect. 6 21
800 51.56 temperature 10.0 270 > th dose dependent rect. 9 1
809 51.58 temperature 10.0 270 > th dose independent rect. 2 5
811 51.58 temperature 30.0 270 < th dose independent rect. 2 5
812 51.58 humidity 50.0 270 > th dose independent rect. 2 5
815 51.58 atmosphere 995.0 270 > th dose independent rect. 2 5
816 51.58 atmosphere 1015.0 270 < th dose independent rect. 2 5
837 51.61 radiation 1.0 10 < th dose dependent rect. 20 9
845 51.62 humidity 90.0 270 < th dose independent rect. 9 1
874 51.65 wind 9.0 10 < th dose independent rect. 20 9
884 51.66 temperature 30.0 10 < th dose independent rect. 20 9
885 51.66 humidity 50.0 10 > th dose independent rect. 20 9
888 51.66 atmosphere 995.0 10 > th dose independent rect. 20 9
890 51.66 radiation 1.0 10 < th dose independent rect. 20 9
895 51.66 temperature 10.0 10 > th dose independent rect. 5 15
897 51.66 atmosphere 1015.0 10 < th dose independent rect. 5 15
937 51.71 temperature 10.0 270 > th dose dependent rect. 17 21
964 51.76 wind 9.0 270 < th dose dependent rect. 9 1
973 51.77 radiation 10.0 10 < th dose dependent sin 11 NA
986 51.79 wind 9.0 10 < th dose independent rect. 5 15
991 51.80 radiation 1.0 10 < th dose dependent rect. 20 18
994 51.81 precipitation 0.1 10 < th dose independent rect. 5 15
999 51.81 precipitation 0.1 10 < th dose dependent rect. 5 15