BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0488800 Os12g0488800|AK064347
         (111 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62950.1  | chr5:25262355-25263033 REVERSE LENGTH=140          109   3e-25
AT3G28956.1  | chr3:10980789-10981380 REVERSE LENGTH=138           95   8e-21

>AT5G62950.1 | chr5:25262355-25263033 REVERSE LENGTH=140
          Length = 139

 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 63/87 (72%)

Query: 1  MKIEKTNAGFLTNFEVLDFLRSRGAKTDPMGCLGAVAASECKVYEYLLKTPACNQTRESI 60
          MKI K NAG LTNFEVLDFL SRGA  D    +  +A SE KVY+YL++T A  QTRESI
Sbjct: 1  MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61 NEFVTRCESFKLTNADKLNVINWRPSS 87
          N+F  +C+ FKL  A+ LN+IN RPSS
Sbjct: 61 NKFADKCKDFKLAKAEILNIINLRPSS 87



>AT3G28956.1 | chr3:10980789-10981380 REVERSE LENGTH=138
          Length = 137

 Score = 94.7 bits (234), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 58/83 (69%)

Query: 5  KTNAGFLTNFEVLDFLRSRGAKTDPMGCLGAVAASECKVYEYLLKTPACNQTRESINEFV 64
          K NAG LTNFE+LDFL SRGA  D    +  +A SE KVY+YL++T A  QTRES+N+  
Sbjct: 2  KANAGALTNFELLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVNKSA 61

Query: 65 TRCESFKLTNADKLNVINWRPSS 87
           +C+ FKL  A+ LN+IN  PSS
Sbjct: 62 DKCKDFKLAKAEILNIINLWPSS 84



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,262,063
Number of extensions: 76689
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 2
Length of query: 111
Length of database: 11,106,569
Length adjustment: 80
Effective length of query: 31
Effective length of database: 8,913,289
Effective search space: 276311959
Effective search space used: 276311959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)