Os12g0468300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os12g0468300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.89 | 0.533 | 8.92 | 0.263 | 1.18 | -2.01 | -3.74 | -2.88 | -0.128 | 19.6 | 31.97 | 236 | 3.07 | 8.07 |
| 135.15 | 0.541 | 8.91 | 0.22 | 0.885 | -2.03 | -2.09 | -- | -0.1 | 18.6 | 37.74 | 204 | 3.37 | 7.92 |
| 138.34 | 0.548 | 8.94 | 0.188 | 1.19 | -1.81 | -- | 0.899 | -0.133 | 19.9 | 34.94 | 219 | 3.32 | 7.13 |
| 139.44 | 0.55 | 8.94 | 0.183 | 0.956 | -2.13 | -- | -- | -0.19 | 19.7 | 34.14 | 232 | 3.05 | 7.65 |
| 148.05 | 0.567 | 8.89 | 0.194 | -- | -2.61 | -- | 1.5 | -0.107 | -- | 45.55 | 227 | 2.72 | 8.05 |
| 167.92 | 0.608 | 8.95 | 0.293 | 2.3 | -- | -1.72 | -- | -0.0449 | 20.1 | -- | -- | -- | -- |
| 176.74 | 0.623 | 8.95 | 0.341 | 2.3 | -- | -- | -- | -0.0471 | 20.2 | -- | -- | -- | -- |
| 146.75 | 0.564 | 8.9 | 0.201 | -- | -2.84 | -- | -- | -0.146 | -- | 40.2 | 262 | 2.23 | 8.28 |
| 139.7 | 0.55 | 8.95 | -- | 1.01 | -2.21 | -- | -- | -0.189 | 19.8 | 32.58 | 238 | 3.04 | 7.48 |
| 467.61 | 1.01 | 8.89 | 0.323 | -- | -- | -- | -- | -0.0735 | -- | -- | -- | -- | -- |
| 179.8 | 0.627 | 8.96 | -- | 2.29 | -- | -- | -- | -0.085 | 20.2 | -- | -- | -- | -- |
| 147.1 | 0.565 | 8.92 | -- | -- | -2.97 | -- | -- | -0.193 | -- | 37.93 | 271 | 2.13 | 8.27 |
| 470.37 | 1.01 | 8.9 | -- | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 2 | 132.14 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 7 | 133.82 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 16 | 135.52 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 26 | 136.36 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 29 | 136.56 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 30 | 136.64 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 36 | 137.47 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 17 |
| 45 | 137.94 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 18 |
| 46 | 137.96 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 15 |
| 50 | 138.10 | temperature | 30.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 53 | 138.33 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 23 | 15 |
| 58 | 138.44 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 61 | 138.48 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 13 |
| 63 | 138.49 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 9 |
| 69 | 138.55 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 71 | 138.73 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 21 |
| 78 | 138.96 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 13 |
| 80 | 138.97 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 9 |
| 84 | 138.99 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 86 | 139.01 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 87 | 139.01 | radiation | 1.0 | 30 | < th | dose dependent | sin | 7 | NA |
| 94 | 139.13 | radiation | 1.0 | 30 | < th | dose independent | sin | 7 | NA |
| 98 | 139.20 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 110 | 139.42 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 7 |
| 111 | 139.42 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 23 | 6 |
| 122 | 139.61 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 7 |
| 152 | 139.95 | wind | 9.0 | 30 | < th | dose dependent | rect. | 23 | 6 |
| 154 | 139.98 | radiation | 1.0 | 30 | > th | dose independent | sin | 6 | NA |
| 171 | 140.29 | wind | 9.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 172 | 140.31 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 173 | 140.31 | temperature | 30.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 174 | 140.31 | humidity | 50.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 177 | 140.31 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 185 | 140.31 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 194 | 140.36 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 18 |
| 195 | 140.36 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 218 | 140.65 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 23 | 6 |
| 219 | 140.65 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 23 | 6 |
| 227 | 140.73 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 229 | 140.74 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 230 | 140.75 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 245 | 140.84 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 370 | 141.85 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 7 |
| 372 | 141.86 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 6 |
| 421 | 142.37 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 12 | 12 |
| 430 | 142.48 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 447 | 142.58 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 451 | 142.60 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 12 | 12 |
| 465 | 142.66 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 469 | 142.71 | temperature | 25.0 | 270 | < th | dose independent | sin | 4 | NA |
| 492 | 142.94 | temperature | 15.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 497 | 142.97 | temperature | 15.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 548 | 143.30 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 551 | 143.31 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 9 | 12 |
| 554 | 143.32 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 569 | 143.37 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 603 | 143.55 | wind | 7.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 665 | 143.84 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 9 | 12 |
| 671 | 143.88 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 705 | 143.97 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 775 | 144.22 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 10 | 19 |
| 776 | 144.23 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 783 | 144.25 | temperature | 20.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 796 | 144.34 | temperature | 10.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 802 | 144.37 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 810 | 144.41 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 832 | 144.46 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 7 | 17 |
| 851 | 144.54 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 861 | 144.57 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 11 | 5 |
| 887 | 144.63 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 895 | 144.67 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 910 | 144.72 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 932 | 144.76 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 17 |
| 954 | 144.84 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 12 | 11 |
| 959 | 144.86 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 10 | 9 |