Os12g0460000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0460000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 224.38 | 0.704 | 3.16 | 0.00763 | 0.405 | -1.17 | 0.154 | 0.925 | 0.469 | 11.6 | 1.158 | 27 | -- | -- |
| 225.03 | 0.699 | 3.15 | 0.0524 | 0.403 | -1.08 | 0.227 | -- | 0.478 | 11.4 | 1.137 | 26 | -- | -- |
| 224.09 | 0.697 | 3.16 | 0.0113 | 0.407 | -1.15 | -- | 1.12 | 0.463 | 11.6 | 1.15 | 20 | -- | -- |
| 225.18 | 0.699 | 3.15 | 0.0665 | 0.406 | -1.06 | -- | -- | 0.48 | 11.4 | 1.162 | 21 | -- | -- |
| 234.28 | 0.713 | 3.17 | 0.0148 | -- | -1.06 | -- | 1.13 | 0.458 | -- | 1.143 | 20 | -- | -- |
| 249.75 | 0.741 | 3.15 | 0.196 | 0.444 | -- | 0.525 | -- | 0.444 | 8.31 | -- | -- | -- | -- |
| 250.58 | 0.741 | 3.15 | 0.213 | 0.441 | -- | -- | -- | 0.445 | 8.52 | -- | -- | -- | -- |
| 235.36 | 0.715 | 3.16 | 0.0682 | -- | -0.978 | -- | -- | 0.473 | -- | 1.18 | 21 | -- | -- |
| 225.29 | 0.699 | 3.15 | -- | 0.407 | -1.07 | -- | -- | 0.473 | 11.4 | 1.146 | 21 | -- | -- |
| 261.48 | 0.756 | 3.16 | 0.215 | -- | -- | -- | -- | 0.449 | -- | -- | -- | -- | -- |
| 251.77 | 0.742 | 3.16 | -- | 0.442 | -- | -- | -- | 0.421 | 8.48 | -- | -- | -- | -- |
| 235.33 | 0.714 | 3.16 | -- | -- | -1.01 | -- | -- | 0.466 | -- | 1.162 | 26 | -- | -- |
| 262.7 | 0.757 | 3.17 | -- | -- | -- | -- | -- | 0.425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.26 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 2 | 221.71 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 3 | 222.00 | wind | 1.0 | 30 | > th | dose independent | sin | 4 | NA |
| 7 | 223.47 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 8 |
| 10 | 224.11 | wind | 1.0 | 90 | < th | dose independent | rect. | 1 | 9 |
| 13 | 224.34 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 8 |
| 14 | 224.34 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 20 | 224.51 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 10 |
| 27 | 224.81 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 32 | 224.87 | wind | 1.0 | 30 | > th | dose independent | rect. | 24 | 14 |
| 37 | 225.15 | wind | 1.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 44 | 225.50 | wind | 1.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 47 | 225.62 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 6 |
| 62 | 226.19 | wind | 1.0 | 30 | > th | dose independent | rect. | 18 | 20 |
| 87 | 227.13 | wind | 1.0 | 90 | < th | dose independent | sin | 5 | NA |
| 91 | 227.25 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 13 |
| 106 | 227.54 | wind | 1.0 | 30 | > th | dose independent | rect. | 18 | 22 |
| 116 | 227.66 | wind | 1.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 136 | 227.83 | wind | 1.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 161 | 228.17 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 169 | 228.33 | wind | 1.0 | 90 | < th | dose dependent | rect. | 2 | 16 |
| 183 | 228.55 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 14 |
| 199 | 228.71 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 216 | 228.96 | wind | 1.0 | 30 | > th | dose independent | no | NA | NA |
| 230 | 229.15 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 290 | 229.99 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 23 |
| 314 | 230.22 | wind | 1.0 | 30 | > th | dose independent | rect. | 21 | 16 |
| 326 | 230.40 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 331 | 230.45 | wind | 1.0 | 10 | > th | dose independent | rect. | 18 | 11 |
| 344 | 230.58 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 369 | 230.88 | wind | 1.0 | 10 | > th | dose independent | rect. | 6 | 23 |
| 378 | 231.03 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 383 | 231.08 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 384 | 231.08 | radiation | 1.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 428 | 231.56 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 475 | 231.92 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 479 | 231.93 | wind | 1.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 518 | 232.26 | wind | 1.0 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 571 | 232.46 | wind | 1.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 594 | 232.59 | wind | 1.0 | 90 | < th | dose dependent | no | NA | NA |
| 607 | 232.61 | wind | 1.0 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 609 | 232.65 | wind | 1.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 632 | 232.81 | wind | 1.0 | 90 | < th | dose independent | rect. | 16 | 18 |
| 694 | 233.25 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 718 | 233.39 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 732 | 233.45 | temperature | 25.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 751 | 233.56 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 773 | 233.69 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 791 | 233.81 | wind | 1.0 | 30 | > th | dose independent | rect. | 18 | 13 |
| 815 | 233.91 | radiation | 1.0 | 10 | > th | dose independent | rect. | 14 | 16 |
| 841 | 233.99 | wind | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 874 | 234.12 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 876 | 234.14 | radiation | 40.0 | 30 | < th | dose independent | rect. | 2 | 16 |
| 896 | 234.25 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 914 | 234.36 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 919 | 234.37 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 920 | 234.37 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 939 | 234.43 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 940 | 234.43 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 943 | 234.43 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 947 | 234.43 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 956 | 234.43 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 957 | 234.43 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 977 | 234.43 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 980 | 234.43 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 990 | 234.43 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |