Os12g0456200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Co-chaperone Hsc20 family protein.
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Os12g0456200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Co-chaperone Hsc20 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.35 | 0.267 | 10 | -0.817 | 0.763 | -0.559 | 0.302 | 0.396 | -0.228 | 5.36 | 19.97 | 1301 | -- | -- |
| 32.7 | 0.266 | 10 | -0.801 | 0.769 | -0.562 | 0.311 | -- | -0.224 | 5.4 | 19.97 | 1294 | -- | -- |
| 32.57 | 0.266 | 10 | -0.815 | 0.763 | -0.558 | -- | 0.394 | -0.229 | 5.33 | 19.97 | 1300 | -- | -- |
| 32.92 | 0.267 | 10 | -0.788 | 0.761 | -0.557 | -- | -- | -0.222 | 5.34 | 19.98 | 1300 | -- | -- |
| 62.71 | 0.369 | 10 | -0.784 | -- | -0.598 | -- | 0.271 | -0.23 | -- | 19.96 | 1345 | -- | -- |
| 43.11 | 0.308 | 9.98 | -0.746 | 0.781 | -- | 0.29 | -- | -0.103 | 4.78 | -- | -- | -- | -- |
| 43.33 | 0.308 | 9.98 | -0.748 | 0.782 | -- | -- | -- | -0.104 | 4.75 | -- | -- | -- | -- |
| 62.82 | 0.369 | 10 | -0.754 | -- | -0.583 | -- | -- | -0.2 | -- | 19.98 | 1346 | -- | -- |
| 49.32 | 0.327 | 10 | -- | 0.726 | -0.542 | -- | -- | -0.173 | 5.37 | 19.92 | 1303 | -- | -- |
| 75.75 | 0.407 | 9.98 | -0.718 | -- | -- | -- | -- | -0.0839 | -- | -- | -- | -- | -- |
| 58.06 | 0.356 | 9.96 | -- | 0.769 | -- | -- | -- | -0.021 | 4.78 | -- | -- | -- | -- |
| 78.15 | 0.412 | 9.99 | -- | -- | -0.607 | -- | -- | -0.143 | -- | 19.97 | 1348 | -- | -- |
| 89.35 | 0.441 | 9.97 | -- | -- | -- | -- | -- | -0.0042 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.86 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 2 | 31.88 | wind | 5 | 43200 | < th | dose independent | sin | 5 | NA |
| 4 | 31.88 | wind | 5 | 43200 | > th | dose dependent | sin | 5 | NA |
| 5 | 31.89 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 8 | 31.94 | wind | 5 | 43200 | > th | dose independent | sin | 5 | NA |
| 14 | 31.97 | wind | 3 | 43200 | > th | dose dependent | sin | 9 | NA |
| 16 | 31.97 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 22 | 31.99 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 23 | 32.00 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 14 |
| 25 | 32.01 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 15 |
| 35 | 32.04 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 50 | 32.07 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 51 | 32.07 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 53 | 32.08 | wind | 5 | 43200 | < th | dose independent | sin | 10 | NA |
| 63 | 32.09 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 100 | 32.16 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 104 | 32.17 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 112 | 32.18 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 118 | 32.19 | wind | 5 | 43200 | > th | dose independent | sin | 10 | NA |
| 119 | 32.19 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 158 | 32.23 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 193 | 32.27 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 7 |
| 198 | 32.28 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 204 | 32.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 205 | 32.28 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 229 | 32.31 | radiation | 10 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 243 | 32.31 | temperature | 15 | 4320 | > th | dose dependent | rect. | 9 | 12 |
| 251 | 32.32 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 317 | 32.36 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 374 | 32.41 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 400 | 32.43 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 424 | 32.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 425 | 32.44 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 452 | 32.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 489 | 32.49 | temperature | 15 | 4320 | > th | dose dependent | sin | 21 | NA |
| 553 | 32.53 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 888 | 32.80 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 903 | 32.81 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 986 | 32.86 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 15 |