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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0451300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.98 (0.0631) R2 : 0.124
β1 : -2.7 (0.379) R2dD : 0.461 R2D : -0.35
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.866 (0.173) R2dE : 0.0764 R2E : -0.0772
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.14 (1.06) R2dD*E : 0.396 R2D*E : -0.295
γ1 : -0.39 (0.144) R2dN8 : 0.0365 R2N8 : -0.0953
σ : 0.907
deviance : 378.94
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.48
memory length : 1520
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
368.74 0.902 3.98 -2.69 0.284 0.889 -1.13 -7.28 -0.4 10.2 22.52 1522 -- --
405.38 0.938 3.72 -0.619 0.275 0.572 -1.03 -- 0.153 10.1 -2.734 7628 -- --
373.63 0.9 3.97 -2.67 0.287 0.893 -- -7.06 -0.39 10.9 22.42 1527 -- --
408.96 0.942 3.73 -0.655 0.293 0.579 -- -- 0.154 11.7 7.769 7406 -- --
378.94 0.907 3.98 -2.7 -- 0.866 -- -7.14 -0.39 -- 22.48 1520 -- --
410.73 0.95 3.69 -0.322 0.268 -- -1.03 -- 0.309 10.3 -- -- -- --
414.58 0.954 3.69 -0.36 0.282 -- -- -- 0.309 11.6 -- -- -- --
414.16 0.952 3.72 -0.479 -- 0.612 -- -- 0.224 -- 7.769 7406 -- --
416.9 0.951 3.69 -- 0.294 0.17 -- -- 0.296 11.6 21.19 7350 -- --
419.57 0.957 3.7 -0.368 -- -- -- -- 0.306 -- -- -- -- --
417.99 0.956 3.68 -- 0.286 -- -- -- 0.349 11.6 -- -- -- --
419.84 0.957 3.7 -- -- 0.362 -- -- 0.297 -- 21.19 7350 -- --
423.14 0.96 3.69 -- -- -- -- -- 0.347 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 350.18 radiation 10 43200 > th dose independent rect. 5 2
14 352.36 humidity 90 43200 < th dose independent rect. 19 5
16 352.43 wind 1 43200 < th dose independent rect. 19 7
17 352.48 wind 1 43200 < th dose dependent rect. 16 10
31 352.69 humidity 90 43200 < th dose independent rect. 22 2
45 353.02 wind 1 43200 > th dose independent rect. 19 7
52 353.78 wind 1 43200 < th dose independent rect. 21 5
54 353.95 humidity 90 43200 > th dose independent rect. 20 4
55 354.01 wind 1 43200 > th dose independent rect. 21 5
68 354.02 humidity 90 43200 > th dose independent rect. 19 6
75 354.36 radiation 10 43200 > th dose independent sin 9 NA
78 354.40 wind 1 43200 < th dose dependent rect. 19 7
86 354.83 humidity 90 43200 > th dose independent rect. 22 2
107 355.03 humidity 90 43200 > th dose dependent rect. 5 1
140 355.98 wind 1 43200 < th dose dependent sin 16 NA
141 355.99 wind 1 43200 < th dose dependent rect. 21 5
151 356.19 radiation 10 43200 < th dose independent rect. 10 4
154 356.24 humidity 90 43200 > th dose dependent rect. 24 12
163 356.41 radiation 10 43200 < th dose independent rect. 10 2
165 356.42 humidity 90 43200 > th dose dependent rect. 1 10
172 356.49 radiation 20 43200 < th dose independent rect. 12 1
177 356.53 humidity 90 43200 > th dose dependent sin 6 NA
178 356.53 wind 3 43200 > th dose dependent rect. 15 2
208 356.70 radiation 20 43200 < th dose dependent rect. 6 8
229 356.84 radiation 1 43200 < th dose dependent rect. 18 8
232 356.85 radiation 20 43200 < th dose dependent rect. 22 16
248 356.87 radiation 1 43200 < th dose dependent rect. 18 10
261 356.91 humidity 90 43200 > th dose dependent rect. 3 6
270 356.97 temperature 25 43200 > th dose dependent rect. 10 3
295 357.01 radiation 1 43200 < th dose dependent rect. 18 1
296 357.01 humidity 90 43200 > th dose dependent rect. 4 3
306 357.03 temperature 25 43200 > th dose dependent rect. 1 12
310 357.05 temperature 25 43200 > th dose dependent rect. 6 7
390 357.34 humidity 90 43200 > th dose independent rect. 19 17
410 357.37 temperature 25 43200 > th dose dependent sin 5 NA
414 357.38 radiation 10 43200 < th dose dependent rect. 8 1
446 357.45 wind 1 43200 < th dose independent rect. 24 1
460 357.48 radiation 20 43200 < th dose dependent sin 4 NA
516 357.61 temperature 30 43200 < th dose independent rect. 12 1
523 357.63 temperature 30 43200 > th dose independent rect. 12 1
524 357.63 humidity 70 43200 < th dose independent rect. 8 5
533 357.66 radiation 30 43200 > th dose independent rect. 9 1
635 357.87 humidity 90 43200 > th dose dependent rect. 19 7
648 357.90 temperature 30 43200 > th dose independent rect. 12 3
657 357.92 radiation 20 43200 < th dose dependent rect. 11 2
684 357.97 humidity 70 43200 > th dose independent rect. 8 3
686 357.97 radiation 40 43200 > th dose independent rect. 13 21
692 357.98 temperature 30 43200 < th dose independent rect. 12 3
695 357.99 humidity 70 43200 > th dose independent rect. 7 6
703 358.01 wind 5 43200 < th dose independent rect. 14 5
712 358.04 radiation 40 43200 > th dose independent sin 12 NA
714 358.04 temperature 30 43200 > th dose independent rect. 10 6
720 358.05 humidity 90 43200 < th dose independent rect. 18 19
750 358.08 wind 1 43200 < th dose dependent rect. 21 2
754 358.09 temperature 30 43200 < th dose independent rect. 10 6
838 358.23 temperature 25 43200 > th dose dependent rect. 6 22
845 358.24 temperature 25 43200 > th dose dependent no NA NA
857 358.24 temperature 25 43200 > th dose dependent rect. 8 23
860 358.25 humidity 90 43200 < th dose independent sin 16 NA
877 358.25 temperature 25 43200 > th dose dependent rect. 3 23
939 358.28 temperature 30 43200 < th dose independent rect. 7 9
940 358.28 temperature 30 43200 < th dose independent rect. 5 11
943 358.28 temperature 30 43200 < th dose independent rect. 20 20
982 358.29 humidity 90 43200 > th dose dependent rect. 10 21
987 358.30 atmosphere 1010 14400 > th dose independent rect. 5 2