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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0448900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pathogen-inducible alpha-dioxygenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.4 (0.0611) R2 : 0.47
β1 : -4.01 (0.279) R2dD : 0.501 R2D : 0.168
β2 : 1.32 (0.136) R2dC : 0.114 R2C : 0.0141
β3 : 3.4 (0.386) R2dE : 0.296 R2E : 0.00502
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 10.3 (1.33) R2dD*E : 0.375 R2D*E : -0.656
γ1 : -0.554 (0.124) R2dN8 : 0.0377 R2N8 : -0.0146
σ : 1
deviance : 462.54
__
_____
C
peak time of C : 9.68
E
wheather : radiation
threshold : 0.24
memory length : 4451
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
446.83 0.993 4.42 -4.16 1.18 3.23 -2.66 10.2 -0.568 8.99 0.6202 4380 -- --
515.03 1.06 4.2 -2.9 0.42 1.95 -2.05 -- -0.108 9.79 3.915 8040 -- --
462.54 1 4.4 -4.01 1.32 3.4 -- 10.3 -0.554 9.68 0.24 4451 -- --
527.99 1.07 4.16 -2.6 0.506 1.73 -- -- -0.0813 9.73 4.186 15257 -- --
533.64 1.08 4.4 -3.67 -- 3.68 -- 9.49 -0.5 -- 0.2224 9482 -- --
538.65 1.09 4.25 -2.87 1.02 -- -3.19 -- -0.549 8.9 -- -- -- --
572.21 1.12 4.25 -2.98 1.06 -- -- -- -0.554 8.4 -- -- -- --
549.77 1.09 4.12 -2.41 -- 2.13 -- -- 0.0758 -- 3.94 15302 -- --
509.4 1.05 4.08 -- 0.691 2.52 -- -- 0.379 10.7 3.41e-05 46801 -- --
634.32 1.18 4.28 -2.98 -- -- -- -- -0.543 -- -- -- -- --
806.95 1.33 4.17 -- 1.04 -- -- -- -0.222 8.61 -- -- -- --
538.14 1.08 4.08 -- -- 2.8 -- -- 0.379 -- 0.0002299 46955 -- --
868.35 1.38 4.2 -- -- -- -- -- -0.213 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 435.07 humidity 90 43200 < th dose independent rect. 24 1
2 437.23 humidity 90 43200 < th dose independent rect. 23 4
7 438.23 radiation 40 43200 < th dose dependent rect. 18 11
10 438.37 humidity 90 43200 > th dose independent rect. 23 4
14 438.75 temperature 20 43200 < th dose dependent rect. 15 11
24 438.97 temperature 20 43200 < th dose dependent sin 16 NA
103 439.88 temperature 20 43200 < th dose dependent rect. 22 3
117 439.95 temperature 20 43200 < th dose dependent rect. 5 22
138 440.09 temperature 20 43200 < th dose dependent rect. 13 23
143 440.11 temperature 20 43200 < th dose dependent no NA NA
158 440.14 temperature 20 43200 < th dose dependent rect. 1 23
161 440.14 temperature 20 43200 < th dose dependent rect. 22 23
186 440.25 temperature 20 43200 < th dose dependent rect. 18 23
192 440.27 humidity 80 43200 > th dose dependent rect. 16 12
328 441.10 humidity 80 43200 > th dose dependent rect. 18 9
335 441.15 humidity 90 43200 > th dose dependent rect. 24 1
346 441.23 humidity 90 43200 > th dose dependent rect. 23 4
373 441.43 temperature 20 43200 < th dose dependent sin 2 NA
382 441.49 humidity 80 43200 > th dose dependent rect. 21 4
386 441.53 humidity 90 43200 > th dose dependent rect. 2 1
416 441.73 humidity 90 14400 > th dose independent rect. 5 1
424 441.78 radiation 40 43200 < th dose dependent rect. 18 9
433 441.86 radiation 10 43200 > th dose dependent rect. 17 1
481 442.20 humidity 80 43200 > th dose dependent sin 14 NA
506 442.33 radiation 10 43200 < th dose dependent rect. 18 3
507 442.33 radiation 10 43200 < th dose dependent rect. 18 5
512 442.36 radiation 10 43200 < th dose dependent rect. 18 1
600 443.14 radiation 40 43200 < th dose dependent rect. 22 7
601 443.15 radiation 40 43200 < th dose dependent rect. 24 5
632 443.57 temperature 20 43200 < th dose dependent rect. 5 1
673 444.01 humidity 90 43200 < th dose independent rect. 14 15
700 444.46 humidity 90 43200 > th dose independent rect. 14 15
702 444.49 humidity 60 43200 < th dose dependent rect. 19 16
769 445.22 radiation 20 43200 > th dose dependent rect. 16 15
771 445.24 humidity 60 43200 < th dose dependent rect. 24 11
819 445.58 radiation 10 43200 < th dose dependent rect. 4 1
827 445.64 radiation 1 43200 < th dose dependent rect. 2 9
831 445.66 radiation 1 43200 < th dose dependent rect. 4 7
835 445.67 radiation 1 43200 < th dose dependent rect. 6 23
839 445.70 radiation 10 43200 < th dose dependent rect. 2 3
849 445.76 radiation 1 43200 < th dose dependent rect. 21 14
866 445.79 radiation 1 43200 < th dose dependent rect. 6 3
878 445.87 radiation 1 43200 > th dose independent rect. 7 3
882 445.88 radiation 1 43200 < th dose independent rect. 7 3
900 445.96 radiation 1 43200 < th dose dependent rect. 6 13
910 445.98 radiation 1 43200 < th dose dependent rect. 6 21
930 446.04 radiation 1 43200 < th dose dependent sin 4 NA
948 446.12 humidity 60 43200 < th dose dependent rect. 8 3
951 446.21 humidity 90 43200 < th dose independent sin 12 NA
970 446.32 temperature 20 43200 > th dose independent rect. 11 5