Os12g0438900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Microsomal signal peptidase 12 kDa subunit family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0438900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Microsomal signal peptidase 12 kDa subunit family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.58 | 0.284 | 10.2 | 0.918 | 0.171 | 1.07 | -0.741 | 1.18 | 0.181 | 5.34 | 24.2 | 208 | -- | -- |
| 38.02 | 0.287 | 10.2 | 1.06 | 0.186 | 0.936 | -0.423 | -- | 0.221 | 5.65 | 24.4 | 167 | -- | -- |
| 37.42 | 0.285 | 10.2 | 0.959 | 0.182 | 1.05 | -- | 0.862 | 0.191 | 6.4 | 24.2 | 165 | -- | -- |
| 38.45 | 0.289 | 10.2 | 1.07 | 0.194 | 0.941 | -- | -- | 0.22 | 6.29 | 24.38 | 159 | -- | -- |
| 39.05 | 0.291 | 10.2 | 0.983 | -- | 1.08 | -- | 0.828 | 0.212 | -- | 24.4 | 174 | -- | -- |
| 50.85 | 0.334 | 10.2 | 0.846 | 0.274 | -- | -0.474 | -- | 0.0518 | 4.89 | -- | -- | -- | -- |
| 51.43 | 0.336 | 10.2 | 0.847 | 0.27 | -- | -- | -- | 0.0541 | 4.74 | -- | -- | -- | -- |
| 39.77 | 0.294 | 10.2 | 1.09 | -- | 0.964 | -- | -- | 0.26 | -- | 25.65 | 172 | -- | -- |
| 66.12 | 0.381 | 10.2 | -- | 0.248 | 0.517 | -- | -- | 0.0332 | 5.8 | 24.2 | 58 | -- | -- |
| 55.3 | 0.347 | 10.2 | 0.858 | -- | -- | -- | -- | 0.0612 | -- | -- | -- | -- | -- |
| 70.35 | 0.392 | 10.3 | -- | 0.286 | -- | -- | -- | -0.0403 | 4.66 | -- | -- | -- | -- |
| 68.52 | 0.386 | 10.2 | -- | -- | 0.58 | -- | -- | 0.0695 | -- | 25.8 | 155 | -- | -- |
| 74.7 | 0.403 | 10.3 | -- | -- | -- | -- | -- | -0.034 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.00 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 3 | 35.19 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 4 | 35.24 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 14 | 35.66 | temperature | 25.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 30 | 36.10 | temperature | 25.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 45 | 36.44 | temperature | 15.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 58 | 36.63 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 69 | 36.81 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 88 | 37.05 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 108 | 37.19 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 111 | 37.24 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 8 |
| 115 | 37.25 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 14 |
| 128 | 37.32 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 12 |
| 144 | 37.36 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 155 | 37.42 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 156 | 37.42 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 203 | 37.53 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 6 |
| 209 | 37.55 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 229 | 37.63 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 244 | 37.68 | temperature | 20.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 263 | 37.71 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 280 | 37.75 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 290 | 37.78 | temperature | 30.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 345 | 37.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 368 | 38.01 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 434 | 38.20 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 493 | 38.34 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 497 | 38.34 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 520 | 38.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 629 | 38.65 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 632 | 38.65 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 644 | 38.66 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 675 | 38.73 | temperature | 10.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 679 | 38.74 | temperature | 25.0 | 720 | > th | dose independent | sin | 15 | NA |
| 709 | 38.83 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 711 | 38.84 | temperature | 25.0 | 720 | < th | dose independent | sin | 15 | NA |
| 789 | 39.04 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 806 | 39.07 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 889 | 39.26 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 11 |
| 898 | 39.28 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 23 |
| 899 | 39.28 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 913 | 39.30 | temperature | 20.0 | 270 | < th | dose independent | rect. | 9 | 22 |
| 918 | 39.31 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 941 | 39.36 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 978 | 39.44 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 979 | 39.44 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 985 | 39.45 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 5 |