BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0438900 Os12g0438900|J065204C04
         (96 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22425.1  | chr2:9515079-9515357 FORWARD LENGTH=93             105   4e-24
AT4G40042.1  | chr4:18559289-18559570 FORWARD LENGTH=94           104   8e-24

>AT2G22425.1 | chr2:9515079-9515357 FORWARD LENGTH=93
          Length = 92

 Score =  105 bits (262), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 60/95 (63%), Gaps = 3/95 (3%)

Query: 1  MDWQGQKLAEMXXXXXXXXXXXXXXXXGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFN 60
          MDWQGQKL E                 GY    F+ M+L+YAGGVVLT LVTVPNWPF+N
Sbjct: 1  MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYN 60

Query: 61 RHPLKWLDAAEADRHPRPQVSATPSTVGKKKAGKN 95
           HPLKWLD +EA++HP+P+V +  S   KKK  K 
Sbjct: 61 LHPLKWLDPSEAEKHPKPEVVSVAS---KKKFSKK 92



>AT4G40042.1 | chr4:18559289-18559570 FORWARD LENGTH=94
          Length = 93

 Score =  104 bits (260), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 55/79 (69%)

Query: 1  MDWQGQKLAEMXXXXXXXXXXXXXXXXGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFN 60
          MDWQGQKLAE                 GY  A F++M+L+YAGGVVLT L+T+PNWP FN
Sbjct: 1  MDWQGQKLAEQLMQILLLIAAVVSFVVGYTTASFRMMMLIYAGGVVLTTLITIPNWPCFN 60

Query: 61 RHPLKWLDAAEADRHPRPQ 79
          RH LKWLD +EA++HP+PQ
Sbjct: 61 RHHLKWLDPSEAEKHPKPQ 79



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,710,743
Number of extensions: 53274
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 96
Length of database: 11,106,569
Length adjustment: 66
Effective length of query: 30
Effective length of database: 9,297,113
Effective search space: 278913390
Effective search space used: 278913390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)