Os12g0438300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0438300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.03 | 0.426 | 12 | 1.98 | 0.3 | -0.602 | 0.577 | 2.24 | 0.358 | 7.91 | 0.38 | 2895 | -- | -- |
| 83.05 | 0.424 | 12 | 2.19 | 0.294 | -1.13 | 0.667 | -- | 0.345 | 8.35 | 0.04994 | 2922 | -- | -- |
| 82.82 | 0.424 | 12 | 1.98 | 0.309 | -0.59 | -- | 2.29 | 0.36 | 7.33 | 0.38 | 2887 | -- | -- |
| 82.57 | 0.423 | 12 | 2.19 | 0.322 | -1.27 | -- | -- | 0.344 | 5.28 | 0.04856 | 3001 | -- | -- |
| 87.74 | 0.436 | 12 | 2.03 | -- | -0.668 | -- | 2.13 | 0.358 | -- | 0.3728 | 2918 | -- | -- |
| 96.09 | 0.46 | 11.9 | 2.54 | 0.304 | -- | 0.549 | -- | 0.557 | 7.94 | -- | -- | -- | -- |
| 96.88 | 0.461 | 11.9 | 2.55 | 0.31 | -- | -- | -- | 0.556 | 7.44 | -- | -- | -- | -- |
| 87.33 | 0.435 | 12 | 2.19 | -- | -1.15 | -- | -- | 0.357 | -- | 0.04888 | 2944 | -- | -- |
| 150.83 | 0.572 | 12 | -- | 0.363 | -1.7 | -- | -- | 0.333 | 5.7 | 1.151e-08 | 43627 | -- | -- |
| 101.99 | 0.472 | 12 | 2.55 | -- | -- | -- | -- | 0.561 | -- | -- | -- | -- | -- |
| 268.02 | 0.766 | 12 | -- | 0.336 | -- | -- | -- | 0.272 | 6.92 | -- | -- | -- | -- |
| 141.33 | 0.554 | 12 | -- | -- | -1.75 | -- | -- | -0.0175 | -- | 3.2e-07 | 47520 | -- | -- |
| 273.93 | 0.773 | 12 | -- | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 2 | 79.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 3 | 79.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 4 | 79.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 6 | 79.33 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 8 | 79.62 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 11 | 79.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 12 | 79.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 15 | 79.94 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 21 | 80.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 26 | 80.12 | radiation | 10 | 90 | < th | dose independent | rect. | 4 | 13 |
| 28 | 80.15 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 4 |
| 40 | 80.40 | radiation | 30 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 45 | 80.46 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 11 |
| 46 | 80.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 50 | 80.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 56 | 80.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 96 | 80.73 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 9 |
| 100 | 80.75 | radiation | 30 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 136 | 81.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 137 | 81.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 139 | 81.09 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 141 | 81.11 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 145 | 81.11 | radiation | 30 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 158 | 81.27 | wind | 7 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 166 | 81.36 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 168 | 81.38 | wind | 1 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 185 | 81.44 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 187 | 81.45 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 7 |
| 198 | 81.50 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 199 | 81.51 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 201 | 81.52 | radiation | 40 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 228 | 81.65 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 238 | 81.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 239 | 81.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 243 | 81.70 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 249 | 81.71 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 338 | 81.96 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 352 | 81.99 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 354 | 82.01 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 406 | 82.15 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 433 | 82.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 438 | 82.29 | humidity | 60 | 90 | > th | dose dependent | rect. | 18 | 10 |
| 454 | 82.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 462 | 82.36 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 476 | 82.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 487 | 82.50 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 516 | 82.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 530 | 82.59 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 540 | 82.61 | radiation | 10 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 564 | 82.63 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 576 | 82.64 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 609 | 82.76 | radiation | 1 | 90 | > th | dose dependent | sin | 4 | NA |
| 619 | 82.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 625 | 82.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 633 | 82.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 12 |
| 640 | 82.82 | radiation | 40 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 641 | 82.82 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 644 | 82.82 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 9 |
| 649 | 82.84 | humidity | 80 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 651 | 82.84 | radiation | 1 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 688 | 82.90 | radiation | 20 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 692 | 82.91 | radiation | 10 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 714 | 82.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 731 | 82.93 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 735 | 82.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 776 | 82.95 | humidity | 90 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 794 | 82.97 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 11 |
| 802 | 82.98 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 849 | 83.03 | radiation | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 854 | 83.05 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 869 | 83.08 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 874 | 83.10 | radiation | 20 | 90 | < th | dose independent | sin | 2 | NA |
| 893 | 83.17 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 903 | 83.19 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 909 | 83.20 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 938 | 83.26 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 957 | 83.30 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 970 | 83.31 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 11 |
| 980 | 83.34 | radiation | 40 | 10 | < th | dose dependent | sin | 2 | NA |
| 985 | 83.35 | radiation | 40 | 43200 | > th | dose independent | rect. | 14 | 20 |