BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0438300 Os12g0438300|AK067669
(512 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425 96 5e-20
AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055 77 2e-14
AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853 76 4e-14
AT3G46710.1 | chr3:17206489-17209032 REVERSE LENGTH=848 56 4e-08
AT3G46530.1 | chr3:17130739-17133246 REVERSE LENGTH=836 54 2e-07
>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
Length = 1424
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 8/231 (3%)
Query: 173 EGQMFGRHVKKEMIINFLLHEDDLPRGKLGVLPILGDIGVGKTTLVQHACDDARVRSHFT 232
+G++ GR K ++N LL +D++ GK V+ ++G GVGKTTL + +D RV HF
Sbjct: 165 QGRLVGRVEDKLALVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEHFE 224
Query: 233 TILLFNFSHTYKMEMCEPKPVLRPKHVIGDVGNSDDPLH---ELEQSFFNKRFLIVFEDV 289
+ + + + K VL + + N++D +L+++ KRFL+V +D
Sbjct: 225 VKMWISAGINFNV-FTVTKAVL--QDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDF 281
Query: 290 DIHKKNMLEELLKSLSCGKQGSKIIVTTSNKHVTTIGTVQPI-KLKFLPCPEYWFFFKAH 348
+ E + + ++GSKI++TT ++ V+T+ + I ++K + E W
Sbjct: 282 WSESDSEWESFQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRF 341
Query: 349 AFAGTDVQE-NPRLVAAGKSIAAKLNGSFFGAKIIGAILKENPDPKFWCTV 398
AF V N L GK IA + G A+ I + L+ P+P W V
Sbjct: 342 AFGNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAV 392
>AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055
Length = 1054
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 175/415 (42%), Gaps = 41/415 (9%)
Query: 3 EAIFSAIVGDVIGRVISLVVSNFNGDHSTEVKLQRICRMLIKIHSVVEEAKGRQITNHGT 62
+A+F +V + S F E L+R+ L+ I +V+ +A+ +QITN
Sbjct: 14 QALFQTLVSEPFR-------SFFKRRELNENLLERLSTALLTITAVLIDAEEKQITNPVV 66
Query: 63 LEWLSELIDGAYQGRYLLDTIGCGEPDLDDKNRDEVDPKPFSLSKFNPAK-RVRVAAFTV 121
+W++EL D Y LD I + R + + S ++ + R+ + F
Sbjct: 67 EKWVNELRDVVYHAEDALDDIAT------EALRLNIGAESSSSNRLRQLRGRMSLGDFLD 120
Query: 122 RNILSRH-DIGVDEIDRVVESLQSMCG--DLKEFMMLLQACQPIHRPLATNIFIEGQMFG 178
N S H + ++++ +E L S LKE L A P R T++ E ++FG
Sbjct: 121 GN--SEHLETRLEKVTIRLERLASQRNILGLKE----LTAMIPKQRLPTTSLVDESEVFG 174
Query: 179 RHVKKEMIINFLLHEDDLPRGKLGVLPILGDIGVGKTTLVQHACDDARVRSHFTTILLFN 238
R K+ I+ FL+ E+ G + V+ I+G GVGKTTL Q +D VRS+F T + +
Sbjct: 175 RDDDKDEIMRFLIPENGKDNG-ITVVAIVGIGGVGKTTLSQLLYNDQHVRSYFGTKVWAH 233
Query: 239 FSHTYKMEMCEPKPVLRPKHVIGDVGNSDDPLHELE--QSFFNKR-------FLIVFEDV 289
S + + K V V + +L+ Q +R FL+V +D+
Sbjct: 234 VSEEFDVFKI-------TKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLPFLLVLDDL 286
Query: 290 DIHKKNMLEELLKSLSCGKQGSKIIVTTSNKHVTTIG-TVQPIKLKFLPCPEYWFFFKAH 348
+ L + QGS+I+VTT ++ V +I V L+ L + W F
Sbjct: 287 WNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKT 346
Query: 349 AFAGTDVQENPRLVAAGKSIAAKLNGSFFGAKIIGAILKENPDPKFWCTVLQRDI 403
F + N + + I K G K +G +L+ W VL I
Sbjct: 347 VFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRI 401
>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
Length = 852
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 155/365 (42%), Gaps = 37/365 (10%)
Query: 34 KLQRICRMLIKIHSVVEEAKGRQITNHGTLEWLSELIDGAYQGRYLLDTIGCGEPDLDDK 93
+L+ + L + S +++A+ ++ TN +++L + Y+ +L + C D DD
Sbjct: 30 QLEDLQSELKYMQSFLKDAERQKRTNETLRTLVADLRELVYEAEDIL--VDCQLADGDDG 87
Query: 94 NRDEVDPKPFSLSKFNPAKRVRVAAFTVRNILSRHDIGVDEIDRVVESLQSMCGDLKEFM 153
N E LS+ +PA RV + + + EI+ + ++S EF+
Sbjct: 88 N--EQRSSNAWLSRLHPA-RVPLQYKKSKRL--------QEINERITKIKSQVEPYFEFI 136
Query: 154 MLLQACQPIHRPLATN-----IFIEGQMFGRHVKKEMIINFLLHEDDLPRGKLGVLPILG 208
+ R T+ ++ Q+ G K I +L +D +L ++ +G
Sbjct: 137 ----TPSNVGRDNGTDRWSSPVYDHTQVVGLEGDKRKIKEWLFRSND---SQLLIMAFVG 189
Query: 209 DIGVGKTTLVQHACDDARVRSHFTTILLFNFSHTYKMEMCEPKPVLRPKHVIGDVGNSDD 268
G+GKTT+ Q +D + F + + S T+ E + +LR +GD DD
Sbjct: 190 MGGLGKTTIAQEVFNDKEIEHRFERRIWVSVSQTFTEEQI-MRSILRN---LGDASVGDD 245
Query: 269 P---LHELEQSFFNKRFLIVFEDVDIHKKNMLEELLKSLSCGKQGSKIIVTTSNKHVTTI 325
L +++Q KR+LIV +DV + +++ + L G QG +IVTT ++ V
Sbjct: 246 IGTLLRKIQQYLLGKRYLIVMDDVWDKNLSWWDKIYQGLPRG-QGGSVIVTTRSESVAKR 304
Query: 326 GTVQPIKL---KFLPCPEYWFFFKAHAFAGTD-VQENPRLVAAGKSIAAKLNGSFFGAKI 381
+ K + L W F AFA D E P L GK I K G K
Sbjct: 305 VQARDDKTHRPELLSPDNSWLLFCNVAFAANDGTCERPELEDVGKEIVTKCKGLPLTIKA 364
Query: 382 IGAIL 386
+G +L
Sbjct: 365 VGGLL 369
>AT3G46710.1 | chr3:17206489-17209032 REVERSE LENGTH=848
Length = 847
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 29/220 (13%)
Query: 194 DDLPRGKLGVLPILGDIGVGKTTLVQHACDDARVRSHFTTILLFNFSHTYKMEMCEPKPV 253
DD K+ ++ I G G+GKT+L + + + V+ F + N S C + +
Sbjct: 177 DDDGDNKIYMISIFGMEGLGKTSLARKLFNSSDVKESFEYRVWTNVSGE-----CNTRDI 231
Query: 254 LRPKHVIGDVGNSDDP-------------LHELEQSFFNKRFLIVFEDVDIHKKNMLEEL 300
L +I + + + LH++ Q KR+L+V +D I + LE L
Sbjct: 232 L--MRIISSLEETSEGELEKMAQQELEVYLHDILQE---KRYLVVVDD--IWESEALESL 284
Query: 301 LKSLSCGKQGSKIIVTTSNKHVTT--IGTVQPIKLKFLPCPEYWFFFKAHAFAGTDVQEN 358
++L C QGS++I+TTS + V V ++FL E W F+ AF ++ +
Sbjct: 285 KRALPCSYQGSRVIITTSIRVVAEGRDKRVYTHNIRFLTFKESWNLFEKKAFRYI-LKVD 343
Query: 359 PRLVAAGKSIAAKLNGSFFGAKIIGAILKENPDPKFWCTV 398
L GK + K G ++ A L P W V
Sbjct: 344 QELQKIGKEMVQKC-GGLPRTTVVLAGLMSRKKPNEWNDV 382
>AT3G46530.1 | chr3:17130739-17133246 REVERSE LENGTH=836
Length = 835
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 15/210 (7%)
Query: 203 VLPILGDIGVGKTTLVQHACDDARVRSHFTTILLFNFSHTYKMEMCEPKPVLRPKHVIGD 262
++ I G G+GKT L + + V+ F S YK + + G+
Sbjct: 187 IISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGE 246
Query: 263 VGNSDDPLHELEQSFF------NKRFLIVFEDVDIHKKNMLEELLKSLSCGKQGSKIIVT 316
E E + K++L+V +D I ++ + L ++L C +GS++I+T
Sbjct: 247 ELEKIRKFAEEELEVYLYGLLEGKKYLVVVDD--IWEREAWDSLKRALPCNHEGSRVIIT 304
Query: 317 TSNKHVT--TIGTVQPIKLKFLPCPEYWFFFKAHAFAGTDVQENPRLVAAGKSIAAKLNG 374
T K V G KL+FL E W F+ AF +++ L+ GK + K G
Sbjct: 305 TRIKAVAEGVDGRFYAHKLRFLTFEESWELFEQRAFRNIQ-RKDEDLLKTGKEMVQKCRG 363
Query: 375 SFFGAKIIGAILKENPDPKFW---CTVLQR 401
++ +L P W C L R
Sbjct: 364 LPLCIVVLAGLLSRKT-PSEWNDVCNSLWR 392
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,837,682
Number of extensions: 454798
Number of successful extensions: 1336
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1350
Number of HSP's successfully gapped: 7
Length of query: 512
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 409
Effective length of database: 8,282,721
Effective search space: 3387632889
Effective search space used: 3387632889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)