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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0437800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MPI.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.39 (0.0543) R2 : 0.348
β1 : -1.29 (0.197) R2dD : 0.064 R2D : 0.0495
β2 : 0.96 (0.14) R2dC : 0.0678 R2C : 0.0344
β3 : 0.805 (0.207) R2dE : 0.0238 R2E : -0.0578
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.94 (0.923) R2dD*E : 0.114 R2D*E : 0.0318
γ1 : 0.963 (0.118) R2dN8 : 0.136 R2N8 : 0.0979
σ : 1
deviance : 463.12
__
_____
C
peak time of C : 6.16
E
wheather : wind
threshold : 9.2
memory length : 4140
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17
open length of G : 1.22

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
451.6 0.998 4.39 -1.27 0.967 0.719 -2.23 -7.56 0.949 5.8 9.154 4202 17 1.03
467.67 1.01 4.43 -0.903 0.923 1.64 -2.34 -- 0.902 5.69 9.132 2485 16.6 0.482
463.12 1 4.39 -1.29 0.96 0.805 -- -7.94 0.963 6.16 9.2 4140 17 1.22
479.41 1.02 4.41 -0.784 0.967 1.73 -- -- 0.984 6.12 8.908 3454 16.6 0.617
510.81 1.05 4.4 -1.26 -- 0.785 -- -7.9 0.987 -- 9.178 4205 17 1.2
526.11 1.08 4.47 -1.36 0.996 -- -2.55 -- 0.752 5.39 -- -- -- --
541.45 1.09 4.46 -1.37 0.99 -- -- -- 0.764 5.83 -- -- -- --
527.32 1.07 4.42 -0.764 -- 1.79 -- -- 1.01 -- 9.49 3141 16.4 0.895
492.89 1.03 4.38 -- 0.951 1.97 -- -- 1.1 6.24 8.8 3742 16.5 1.01
592.31 1.14 4.47 -1.34 -- -- -- -- 0.788 -- -- -- -- --
590.7 1.14 4.42 -- 0.969 -- -- -- 0.917 5.89 -- -- -- --
539.49 1.08 4.38 -- -- 1.93 -- -- 1.12 -- 8.606 3838 16.5 0.988
639.43 1.18 4.44 -- -- -- -- -- 0.936 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 455.18 wind 9 4320 > th dose dependent rect. 17 1
2 455.44 wind 9 4320 > th dose dependent rect. 16 7
6 455.81 wind 9 4320 > th dose dependent rect. 16 10
22 458.20 wind 9 4320 > th dose independent rect. 17 6
25 458.96 wind 9 4320 > th dose independent rect. 17 9
33 459.42 wind 9 4320 < th dose independent rect. 17 5
38 459.59 wind 9 4320 < th dose independent rect. 16 10
49 460.09 wind 9 4320 > th dose dependent rect. 16 18
77 462.51 wind 9 4320 < th dose independent rect. 17 1
85 462.93 wind 9 1440 < th dose independent rect. 23 3
87 463.17 wind 7 4320 < th dose independent rect. 24 1
89 463.51 humidity 80 14400 > th dose dependent rect. 1 1
97 464.15 wind 9 4320 > th dose independent rect. 17 1
98 464.27 wind 7 1440 > th dose dependent rect. 23 11
111 465.19 humidity 50 14400 > th dose dependent rect. 1 1
115 465.36 radiation 10 43200 > th dose independent rect. 17 13
121 465.60 radiation 10 43200 > th dose independent rect. 17 1
150 466.41 humidity 90 14400 > th dose independent rect. 1 1
154 466.92 wind 5 4320 > th dose independent rect. 24 1
155 466.98 wind 9 4320 > th dose dependent sin 13 NA
158 467.13 humidity 90 14400 > th dose independent rect. 24 3
165 467.73 wind 3 270 > th dose independent rect. 11 8
167 467.83 temperature 20 14400 < th dose dependent rect. 6 12
174 468.31 temperature 15 14400 > th dose independent rect. 5 5
190 468.75 radiation 1 14400 < th dose dependent rect. 23 6
193 468.83 temperature 15 14400 > th dose independent rect. 4 7
195 468.85 radiation 1 14400 < th dose dependent rect. 20 9
202 469.00 temperature 15 14400 < th dose independent rect. 4 6
217 469.44 wind 9 4320 > th dose independent sin 12 NA
233 469.84 humidity 60 43200 < th dose independent rect. 6 1
236 469.86 wind 5 4320 > th dose dependent rect. 24 1
239 469.91 temperature 20 14400 < th dose dependent rect. 6 4
253 470.17 temperature 20 14400 < th dose dependent rect. 11 6
254 470.19 wind 7 1440 < th dose independent rect. 23 9
257 470.27 wind 7 1440 < th dose independent rect. 23 7
276 470.34 temperature 20 14400 < th dose dependent rect. 9 8
285 470.45 temperature 20 14400 < th dose dependent rect. 14 2
288 470.49 temperature 20 14400 < th dose independent rect. 12 4
292 470.52 temperature 20 14400 < th dose independent rect. 14 1
301 470.66 temperature 20 14400 > th dose independent rect. 14 1
319 470.83 temperature 20 14400 < th dose dependent sin 23 NA
333 470.96 temperature 20 14400 < th dose dependent rect. 12 1
334 470.99 temperature 20 14400 > th dose independent rect. 12 4
339 471.04 temperature 20 14400 < th dose dependent rect. 9 1
348 471.13 wind 9 4320 < th dose independent sin 13 NA
373 471.31 wind 7 1440 > th dose independent rect. 23 9
375 471.32 wind 7 1440 < th dose independent rect. 23 11
383 471.44 wind 7 1440 > th dose independent rect. 2 6
422 471.88 radiation 1 14400 < th dose dependent rect. 18 8
435 471.96 humidity 90 14400 < th dose independent rect. 1 1
477 472.28 temperature 15 14400 > th dose independent sin 5 NA
485 472.35 temperature 15 14400 > th dose independent rect. 20 14
487 472.36 wind 7 1440 > th dose independent rect. 23 6
499 472.46 radiation 1 14400 < th dose dependent rect. 18 1
500 472.47 radiation 1 14400 < th dose dependent rect. 18 4
541 472.71 wind 7 4320 > th dose dependent rect. 22 4
548 472.75 temperature 15 14400 > th dose independent rect. 23 1
560 472.83 wind 5 1440 > th dose dependent rect. 1 4
572 472.96 humidity 70 43200 < th dose independent rect. 1 7
579 473.00 wind 5 1440 > th dose dependent rect. 23 6
608 473.14 wind 7 14400 > th dose dependent rect. 7 3
615 473.17 humidity 90 14400 > th dose independent rect. 24 7
632 473.34 wind 1 270 > th dose dependent rect. 12 7
633 473.35 temperature 15 14400 > th dose independent rect. 3 18
638 473.37 wind 5 1440 > th dose dependent rect. 2 1
673 473.61 radiation 1 14400 < th dose independent rect. 17 9
682 473.66 radiation 1 14400 < th dose independent rect. 17 2
703 473.73 temperature 15 14400 > th dose independent rect. 23 17
769 474.12 wind 7 1440 > th dose independent rect. 21 13
781 474.21 humidity 80 14400 > th dose dependent rect. 22 6
799 474.37 humidity 90 14400 < th dose independent rect. 23 3
800 474.37 humidity 70 43200 < th dose dependent rect. 2 6
801 474.38 humidity 70 43200 > th dose independent rect. 1 7
810 474.45 radiation 1 14400 < th dose dependent rect. 4 1
826 474.52 temperature 15 14400 > th dose independent rect. 23 22
909 474.92 wind 9 4320 > th dose dependent rect. 19 2
945 475.12 wind 9 14400 > th dose dependent rect. 12 1
947 475.13 wind 9 14400 > th dose independent rect. 19 1
973 475.32 wind 7 14400 < th dose independent rect. 22 13