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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0413400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.74 (0.0377) R2 : 0.0955
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.531 (0.0953) R2dC : 0.0621 R2C : 0.0504
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.333 (0.0792) R2dN8 : 0.0452 R2N8 : 0.0335
σ : 0.71
deviance : 230.43
__
_____
C
peak time of C : 20.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
189.74 0.647 3.81 -0.684 0.526 -0.268 -0.0941 4.57 0.265 20.7 2.904e-05 5155 -- --
205.94 0.673 3.77 -0.921 0.527 1.02 -0.0156 -- 0.224 20.6 0.2426 5758 -- --
189.77 0.642 3.81 -0.681 0.525 -0.268 -- 4.56 0.265 20.7 0.263 5154 -- --
201.8 0.662 3.79 -0.783 0.542 0.566 -- -- 0.156 20.5 0.0002512 2110 -- --
205.34 0.667 3.8 -0.67 -- -0.249 -- 4.57 0.261 -- 0.343 5171 -- --
207.21 0.675 3.77 -0.94 0.527 -- -0.0506 -- 0.228 20.5 -- -- -- --
207.22 0.674 3.77 -0.938 0.527 -- -- -- 0.228 20.5 -- -- -- --
217.75 0.687 3.76 -0.762 -- 0.604 -- -- 0.188 -- 0.3102 2220 -- --
214.14 0.682 3.77 -- 0.548 1.02 -- -- 0.239 20.6 0.2034 2107 -- --
222.8 0.697 3.75 -0.94 -- -- -- -- 0.223 -- -- -- -- --
230.43 0.71 3.74 -- 0.531 -- -- -- 0.333 20.4 -- -- -- --
230.58 0.707 3.75 -- -- 0.988 -- -- 0.233 -- 0.3745 2220 -- --
246.13 0.732 3.73 -- -- -- -- -- 0.328 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.39 wind 9.0 43200 < th dose independent rect. 18 14
2 183.58 wind 9.0 43200 > th dose independent rect. 18 13
11 185.04 wind 9.0 43200 > th dose dependent rect. 18 13
19 185.85 wind 7.0 43200 > th dose dependent rect. 19 1
20 186.04 wind 9.0 43200 < th dose independent rect. 18 8
36 186.52 wind 9.0 43200 > th dose independent sin 11 NA
37 186.54 wind 7.0 43200 > th dose independent rect. 19 1
45 186.72 wind 9.0 43200 < th dose independent sin 11 NA
54 186.84 wind 7.0 43200 > th dose dependent sin 11 NA
100 187.48 precipitation 0.1 4320 > th dose independent rect. 9 15
105 187.54 precipitation 0.1 4320 > th dose dependent rect. 9 9
109 187.59 precipitation 0.1 4320 > th dose independent rect. 6 18
112 187.60 precipitation 0.1 4320 > th dose dependent rect. 12 6
114 187.63 precipitation 0.1 4320 < th dose independent rect. 9 15
116 187.63 precipitation 0.1 4320 < th dose dependent rect. 9 15
121 187.68 wind 9.0 43200 > th dose dependent rect. 14 9
123 187.70 precipitation 0.1 4320 < th dose independent rect. 6 18
124 187.70 precipitation 0.1 4320 < th dose dependent rect. 6 18
125 187.71 temperature 30.0 720 < th dose independent sin 9 NA
126 187.71 wind 7.0 43200 < th dose independent rect. 19 1
137 187.77 atmosphere 1005.0 10 > th dose dependent rect. 4 6
139 187.77 precipitation 0.1 4320 > th dose dependent rect. 6 12
152 187.82 wind 7.0 43200 > th dose dependent rect. 18 5
183 187.99 wind 9.0 43200 < th dose independent rect. 14 12
185 188.00 precipitation 0.1 4320 > th dose independent rect. 9 9
189 188.01 wind 9.0 43200 > th dose dependent rect. 14 12
192 188.02 wind 9.0 43200 > th dose dependent rect. 14 16
199 188.07 precipitation 0.1 4320 < th dose independent rect. 9 9
200 188.07 precipitation 0.1 4320 < th dose dependent rect. 9 9
204 188.09 precipitation 0.1 4320 > th dose independent rect. 12 12
212 188.12 precipitation 0.1 4320 > th dose dependent rect. 20 22
217 188.14 wind 9.0 43200 < th dose independent rect. 14 9
237 188.20 wind 7.0 43200 > th dose independent rect. 6 1
255 188.24 temperature 30.0 720 < th dose independent rect. 18 17
258 188.25 wind 9.0 43200 > th dose independent rect. 14 12
272 188.27 wind 9.0 43200 < th dose independent rect. 14 16
285 188.32 wind 9.0 43200 > th dose independent rect. 14 9
328 188.47 wind 9.0 43200 > th dose independent rect. 14 16
331 188.48 precipitation 0.1 4320 > th dose dependent rect. 6 18
336 188.50 precipitation 0.1 4320 > th dose independent sin 20 NA
337 188.50 precipitation 0.1 4320 > th dose dependent rect. 9 15
367 188.57 precipitation 0.1 4320 < th dose independent sin 20 NA
370 188.57 precipitation 0.1 4320 < th dose dependent sin 20 NA
412 188.66 precipitation 0.1 4320 > th dose independent rect. 6 12
421 188.68 precipitation 0.1 4320 < th dose independent rect. 6 12
423 188.68 precipitation 0.1 4320 < th dose dependent rect. 6 12
456 188.76 temperature 30.0 720 > th dose independent rect. 17 19
463 188.77 wind 7.0 43200 < th dose independent rect. 17 22
490 188.86 wind 5.0 43200 > th dose dependent rect. 17 22
504 188.92 wind 7.0 43200 < th dose independent rect. 6 1
533 188.98 wind 5.0 4320 > th dose independent rect. 19 6
549 189.01 precipitation 0.1 4320 > th dose dependent rect. 12 12
603 189.16 wind 5.0 4320 > th dose independent rect. 19 3
604 189.16 wind 5.0 4320 < th dose independent rect. 19 6
606 189.16 precipitation 0.1 4320 > th dose dependent sin 21 NA
625 189.20 wind 5.0 4320 < th dose independent rect. 19 3
667 189.28 temperature 30.0 720 < th dose independent rect. 17 20
697 189.34 precipitation 0.1 4320 > th dose independent rect. 17 6
729 189.41 temperature 30.0 720 > th dose independent sin 9 NA
740 189.42 temperature 30.0 720 < th dose independent rect. 21 16
747 189.44 wind 7.0 14400 > th dose independent rect. 8 1
755 189.45 wind 7.0 43200 < th dose independent rect. 11 23
759 189.46 wind 7.0 43200 > th dose independent rect. 11 23
772 189.50 temperature 25.0 10 > th dose independent rect. 3 6
773 189.50 precipitation 0.1 4320 < th dose independent rect. 17 6
776 189.50 precipitation 0.1 4320 < th dose dependent rect. 17 6
818 189.59 wind 7.0 43200 < th dose independent no NA NA
823 189.59 wind 7.0 43200 < th dose independent rect. 24 23
828 189.60 wind 7.0 43200 < th dose independent rect. 7 23
843 189.64 wind 7.0 43200 > th dose independent rect. 24 23
845 189.65 wind 7.0 43200 > th dose independent no NA NA
853 189.66 wind 7.0 43200 > th dose independent rect. 7 23
863 189.67 wind 7.0 43200 < th dose independent rect. 3 23
892 189.72 wind 7.0 43200 > th dose independent rect. 11 19
895 189.72 precipitation 0.1 4320 < th dose independent rect. 20 22
898 189.72 precipitation 0.1 4320 < th dose dependent rect. 20 22
901 189.73 atmosphere 995.0 43200 < th dose dependent rect. 14 1
902 189.73 wind 3.0 4320 > th dose dependent rect. 20 3
908 189.74 precipitation 0.1 4320 > th dose independent rect. 20 22
909 189.74 wind 7.0 43200 > th dose independent rect. 3 23
926 189.76 wind 7.0 43200 < th dose independent rect. 11 19
933 189.77 wind 5.0 43200 > th dose dependent rect. 6 1
954 189.80 atmosphere 995.0 43200 < th dose dependent rect. 12 4
976 189.84 wind 5.0 14400 > th dose independent rect. 20 18
989 189.85 wind 5.0 43200 > th dose dependent rect. 11 23