Os12g0405200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Conserved NnrU/NnuR ortholog membrane enzyme.
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Os12g0405200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Conserved NnrU/NnuR ortholog membrane enzyme.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.81 | 0.257 | 12.4 | -0.393 | 0.0629 | -0.86 | -0.583 | 0.87 | -0.267 | 16.9 | 21.7 | 3874 | -- | -- |
| 31.02 | 0.259 | 12.4 | -0.592 | 0.0432 | -0.977 | -0.601 | -- | -0.332 | 16 | 21.37 | 3979 | -- | -- |
| 30.54 | 0.257 | 12.4 | -0.398 | 0.0841 | -0.865 | -- | 0.877 | -0.269 | 19.3 | 21.73 | 3735 | -- | -- |
| 31.77 | 0.263 | 12.4 | -0.606 | 0.0714 | -0.986 | -- | -- | -0.342 | 19.6 | 21.33 | 3857 | -- | -- |
| 30.87 | 0.259 | 12.4 | -0.385 | -- | -0.865 | -- | 0.896 | -0.266 | -- | 21.76 | 3898 | -- | -- |
| 54.51 | 0.346 | 12.5 | -1.18 | 0.0911 | -- | -0.645 | -- | -0.654 | 16.4 | -- | -- | -- | -- |
| 55.63 | 0.349 | 12.5 | -1.18 | 0.0882 | -- | -- | -- | -0.658 | 16.8 | -- | -- | -- | -- |
| 32.06 | 0.264 | 12.4 | -0.567 | -- | -1.02 | -- | -- | -0.335 | -- | 21.11 | 3975 | -- | -- |
| 30.22 | 0.256 | 12.4 | -- | 0.0493 | -1.27 | -- | -- | -0.255 | 20.6 | 18.5 | 28418 | -- | -- |
| 56.04 | 0.35 | 12.5 | -1.18 | -- | -- | -- | -- | -0.66 | -- | -- | -- | -- | -- |
| 92.36 | 0.45 | 12.5 | -- | 0.11 | -- | -- | -- | -0.526 | 16.5 | -- | -- | -- | -- |
| 30.25 | 0.256 | 12.4 | -- | -- | -1.28 | -- | -- | -0.266 | -- | 18.7 | 24129 | -- | -- |
| 93.01 | 0.45 | 12.5 | -- | -- | -- | -- | -- | -0.529 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.53 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 3 | 25.58 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 4 | 25.60 | temperature | 15 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 51 | 25.85 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 57 | 25.88 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 82 | 25.96 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 112 | 26.05 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 115 | 26.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 117 | 26.06 | temperature | 15 | 43200 | > th | dose independent | sin | 7 | NA |
| 119 | 26.06 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 143 | 26.11 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 146 | 26.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 165 | 26.16 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 200 | 26.24 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 221 | 26.28 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 226 | 26.30 | temperature | 15 | 43200 | < th | dose independent | sin | 8 | NA |
| 341 | 26.50 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 375 | 26.55 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 451 | 26.66 | humidity | 90 | 43200 | > th | dose dependent | sin | 2 | NA |
| 484 | 26.71 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 519 | 26.76 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 545 | 26.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 558 | 26.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 589 | 26.83 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 639 | 26.88 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 643 | 26.88 | temperature | 15 | 43200 | < th | dose dependent | sin | 10 | NA |
| 651 | 26.89 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 653 | 26.89 | radiation | 30 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 662 | 26.90 | radiation | 30 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 676 | 26.91 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 696 | 26.92 | radiation | 30 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 702 | 26.92 | radiation | 1 | 43200 | < th | dose dependent | sin | 7 | NA |
| 709 | 26.93 | radiation | 30 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 713 | 26.93 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 728 | 26.95 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 729 | 26.95 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 751 | 26.96 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 753 | 26.96 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 754 | 26.96 | radiation | 30 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 766 | 26.97 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 825 | 27.03 | temperature | 15 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 827 | 27.03 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 828 | 27.03 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 833 | 27.04 | temperature | 15 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 892 | 27.09 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 903 | 27.10 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 919 | 27.11 | temperature | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 962 | 27.16 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 971 | 27.16 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 987 | 27.18 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |