BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0405200 Os12g0405200|AK066126
         (367 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10830.1  | chr1:3605736-3607449 REVERSE LENGTH=368            469   e-132

>AT1G10830.1 | chr1:3605736-3607449 REVERSE LENGTH=368
          Length = 367

 Score =  469 bits (1206), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 216/300 (72%), Positives = 262/300 (87%), Gaps = 1/300 (0%)

Query: 68  SDGEVDGAPRLVGEDSAAFRLGDQRVASWVYFGGILAVVLWGLNVLWIDPATGVGTRFLE 127
           SD E      L+GEDSAAF LG Q++ SWVYFG +L VVL+ LNV+WID +TG G  F++
Sbjct: 69  SDSE-SSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLFILNVVWIDNSTGFGKSFID 127

Query: 128 AVAAVSDNHEVTMLLLTIIFAVVHSGMASLRETGEKIIGERAYRVMFAGISLPLAVSTVV 187
           AV+ +S + EV ML+L +IFA+VHSG+ASLR+ GEK+IGERA+RV+FAGISLPLA+ST+V
Sbjct: 128 AVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGERAFRVLFAGISLPLAMSTIV 187

Query: 188 YFINHRYDGIQLWQVQGISGIHELVWLSSFISFFFLYPSTFNLLEVAAVDKPKFHMWETG 247
           YFINHRYDG QLWQ+QG+ G+HE +W+++F+SFFFLYPSTFNLLEVAAVDKPK H+WETG
Sbjct: 188 YFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTFNLLEVAAVDKPKMHLWETG 247

Query: 248 IMRITRHPQMVGQVIWCLAHTLWIGNSVAVAASVGLIGHHLFGVWNGDRRLASRYGEAFE 307
           IMRITRHPQMVGQ++WCLAHTLWIGN+VA +AS+GLI HHLFG WNGDRRLA RYGE FE
Sbjct: 248 IMRITRHPQMVGQIVWCLAHTLWIGNTVAASASLGLIAHHLFGAWNGDRRLAKRYGEDFE 307

Query: 308 VLKKRTSVIPFAAVIDGRQKLPKDYYREFIRLPYLAITALTLGAYFVHPLMQASSYQLPW 367
            +KKRTSVIPFAA+ +GRQ LP+DYY+EF+RLPYLAITALT+GAYF HPLMQ +S++L W
Sbjct: 308 SIKKRTSVIPFAAIFEGRQVLPEDYYKEFVRLPYLAITALTVGAYFAHPLMQGASFRLHW 367



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,128,433
Number of extensions: 272686
Number of successful extensions: 709
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 709
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,364,969
Effective search space: 2233446723
Effective search space used: 2233446723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)