Os12g0298600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0298600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.3 | 0.195 | 10.1 | -0.137 | 0.297 | 0.746 | 0.219 | 0.344 | 0.046 | 0.328 | 19.2 | 837 | -- | -- |
| 17.39 | 0.194 | 10.1 | -0.113 | 0.303 | 0.685 | 0.212 | -- | 0.0522 | 0.164 | 19.33 | 861 | -- | -- |
| 17.48 | 0.195 | 10.1 | -0.13 | 0.295 | 0.649 | -- | 0.0535 | 0.0506 | 0.437 | 19.5 | 859 | -- | -- |
| 17.48 | 0.195 | 10.1 | -0.126 | 0.294 | 0.63 | -- | -- | 0.0522 | 0.428 | 19.6 | 861 | -- | -- |
| 22.68 | 0.222 | 10.1 | -0.135 | -- | 0.392 | -- | -0.331 | 0.0421 | -- | 19.23 | 978 | -- | -- |
| 19.93 | 0.209 | 10.1 | -0.244 | 0.255 | -- | 0.239 | -- | 0.00407 | 0.329 | -- | -- | -- | -- |
| 20.17 | 0.21 | 10.1 | -0.253 | 0.254 | -- | -- | -- | 0.00268 | 0.497 | -- | -- | -- | -- |
| 22.69 | 0.222 | 10.1 | -0.159 | -- | 0.485 | -- | -- | 0.042 | -- | 19 | 925 | -- | -- |
| 17.85 | 0.197 | 10.1 | -- | 0.299 | 0.708 | -- | -- | 0.0707 | 0.431 | 19.7 | 894 | -- | -- |
| 24.23 | 0.23 | 10.1 | -0.244 | -- | -- | -- | -- | 0.00693 | -- | -- | -- | -- | -- |
| 21.86 | 0.219 | 10.1 | -- | 0.251 | -- | -- | -- | 0.0309 | 0.446 | -- | -- | -- | -- |
| 23.11 | 0.224 | 10.1 | -- | -- | 0.563 | -- | -- | 0.0652 | -- | 18.15 | 2282 | -- | -- |
| 25.8 | 0.237 | 10.1 | -- | -- | -- | -- | -- | 0.034 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 9 |
| 6 | 15.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 9 | 15.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 17 | 15.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 21 | 15.94 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 27 | 15.99 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 43 | 16.11 | temperature | 10 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 51 | 16.19 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 9 |
| 56 | 16.22 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 8 |
| 79 | 16.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 88 | 16.38 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 107 | 16.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 122 | 16.47 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 125 | 16.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 141 | 16.50 | temperature | 20 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 171 | 16.55 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 6 |
| 172 | 16.55 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 8 |
| 181 | 16.56 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 10 |
| 223 | 16.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 252 | 16.62 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 360 | 16.71 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 367 | 16.72 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 378 | 16.73 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 390 | 16.74 | humidity | 80 | 270 | > th | dose independent | rect. | 7 | 20 |
| 402 | 16.75 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 13 |
| 429 | 16.77 | temperature | 20 | 720 | < th | dose independent | sin | 4 | NA |
| 468 | 16.79 | humidity | 70 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 479 | 16.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 482 | 16.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 571 | 16.88 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 659 | 16.95 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 15 |
| 690 | 16.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 728 | 17.00 | humidity | 80 | 10 | > th | dose independent | rect. | 11 | 18 |
| 771 | 17.04 | humidity | 80 | 30 | > th | dose independent | rect. | 8 | 21 |
| 772 | 17.04 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 869 | 17.11 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 3 | 4 |