BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0298600 Os12g0298600|J023110M23
         (109 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14385.1  | chr4:8287144-8288622 REVERSE LENGTH=164            109   2e-25

>AT4G14385.1 | chr4:8287144-8288622 REVERSE LENGTH=164
          Length = 163

 Score =  109 bits (273), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 75/84 (89%)

Query: 26  NPTAMLSALMSKRAKLQEELRSIERQVYEMETTYLQESNQFGSVLKGFESFLSSSKNTSN 85
           +P AML++L++KR KL++ELRSIE+QVYE+ET+YLQES+  G+ LKGFE FLSSSK+T++
Sbjct: 10  DPGAMLTSLLNKREKLRQELRSIEKQVYELETSYLQESSHIGNALKGFEGFLSSSKSTAS 69

Query: 86  LKRSRKFQADERLFSLSSVTSPAV 109
            KRSRKFQ ++R+FSLSSVTSPA 
Sbjct: 70  AKRSRKFQPEDRVFSLSSVTSPAA 93



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.121    0.305 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,471,933
Number of extensions: 47193
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 11,106,569
Length adjustment: 78
Effective length of query: 31
Effective length of database: 8,968,121
Effective search space: 278011751
Effective search space used: 278011751
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)