Os12g0278700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cystinosin homolog.
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Os12g0278700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cystinosin homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.97 | 0.342 | 12.6 | -0.854 | 0.181 | 1.13 | -0.158 | -3.7 | -0.404 | 14.6 | 24.02 | 1150 | -- | -- |
| 60.16 | 0.361 | 12.6 | -0.0623 | 0.0629 | 0.762 | -0.0204 | -- | -0.324 | 14.5 | 21.3 | 7950 | -- | -- |
| 53.03 | 0.339 | 12.6 | -0.848 | 0.181 | 1.13 | -- | -3.67 | -0.4 | 14.2 | 24.08 | 1147 | -- | -- |
| 59.39 | 0.359 | 12.5 | -0.000711 | 0.0508 | 0.696 | -- | -- | -0.24 | 14.9 | 22.51 | 6640 | -- | -- |
| 54.68 | 0.344 | 12.6 | -0.907 | -- | 1.07 | -- | -3.83 | -0.386 | -- | 24.71 | 1259 | -- | -- |
| 76.45 | 0.41 | 12.5 | 0.3 | 0.0914 | -- | -0.495 | -- | -0.0353 | 19.5 | -- | -- | -- | -- |
| 77.12 | 0.411 | 12.5 | 0.312 | 0.0907 | -- | -- | -- | -0.0362 | 19.6 | -- | -- | -- | -- |
| 59.57 | 0.359 | 12.5 | -0.0131 | -- | 0.707 | -- | -- | -0.23 | -- | 22.3 | 6518 | -- | -- |
| 59.23 | 0.358 | 12.5 | -- | 0.0954 | 0.697 | -- | -- | -0.24 | 17 | 22.3 | 6782 | -- | -- |
| 77.57 | 0.412 | 12.5 | 0.311 | -- | -- | -- | -- | -0.0376 | -- | -- | -- | -- | -- |
| 79.69 | 0.418 | 12.5 | -- | 0.0883 | -- | -- | -- | -0.071 | 19.9 | -- | -- | -- | -- |
| 59.57 | 0.359 | 12.5 | -- | -- | 0.702 | -- | -- | -0.227 | -- | 22.35 | 6518 | -- | -- |
| 80.11 | 0.418 | 12.5 | -- | -- | -- | -- | -- | -0.072 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.30 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 52.34 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 5 | 52.89 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 7 | 53.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 10 | 53.30 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 12 | 53.34 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 14 | 53.42 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 15 | 53.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 16 | 53.51 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 17 | 53.52 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 19 | 53.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 21 | 53.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 8 |
| 29 | 53.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 30 | 53.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 41 | 53.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 42 | 53.65 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 55 | 53.68 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 77 | 53.74 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 78 | 53.76 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 79 | 53.76 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 98 | 53.81 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 102 | 53.82 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 14 |
| 108 | 53.83 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 115 | 53.84 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 14 |
| 117 | 53.85 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 141 | 53.89 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 164 | 53.94 | wind | 5 | 43200 | < th | dose independent | sin | 18 | NA |
| 203 | 54.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 230 | 54.03 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 13 |
| 248 | 54.07 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 252 | 54.08 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 288 | 54.17 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 318 | 54.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 323 | 54.22 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 324 | 54.22 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 345 | 54.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 21 |
| 360 | 54.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 419 | 54.28 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 469 | 54.37 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 471 | 54.38 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 489 | 54.43 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 496 | 54.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 497 | 54.44 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 578 | 54.52 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 613 | 54.57 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 9 |
| 627 | 54.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 710 | 54.66 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 803 | 54.80 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 829 | 54.82 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 857 | 54.84 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 901 | 54.91 | radiation | 40 | 43200 | > th | dose dependent | sin | 10 | NA |