BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0278700 Os12g0278700|AK071421
         (268 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40670.1  | chr5:16285968-16287591 FORWARD LENGTH=271          368   e-102

>AT5G40670.1 | chr5:16285968-16287591 FORWARD LENGTH=271
          Length = 270

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/270 (63%), Positives = 216/270 (80%), Gaps = 5/270 (1%)

Query: 1   MSSWNSVGMEVLYQVLGWVAFFAWSFSFYPQVFLNFKRKSVVGLNFDFLVLNLTKHSSYL 60
           M+SWNS+ +E+ Y+++GW+AF +WS SFYPQ+ LNF+R+SVVGLNFDF++LNLTKHSSY+
Sbjct: 1   MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYM 60

Query: 61  IYNAALFFSPFIQRQYHETYGDKEMIPVAANDVAFSVHAVALTAFTLFQVFIYERGNQKI 120
           IYN  L+FSP IQ+QY +TYGDKEMIPVAANDVAFS+HAV +TA TLFQ+FIYERG QK+
Sbjct: 61  IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKV 120

Query: 121 SKVCISITAIVWTAAIVCLIVAWPKSNWLWLIDVFNSIQVGMTAIKYIPQAIMNFRRKST 180
           S++ I I  +VW  A +C  +A P  +WLWLI +FNSIQV MT +KYIPQA MNF RKST
Sbjct: 121 SRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query: 181 IGWSIGNILLDLTGGVLNFGQMGVQSIDQHTLVNFYGNIGKTLLSLEVVFFDILFIIQHY 240
           +GWSIGNILLD TGG+ N+ QM +QSIDQ++  NFYGN+GKTLLSL  +FFDILF+ QHY
Sbjct: 181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHY 240

Query: 241 VLYPVKR-----DENAANGYPILPIEAKHV 265
           VLYP K+     +    +  P++    +HV
Sbjct: 241 VLYPEKKVSKSPETGEESNEPLIDSSHEHV 270



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,778,427
Number of extensions: 227315
Number of successful extensions: 563
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)