Os12g0275100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0275100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.95 | 0.697 | 7.87 | -2.49 | 0.689 | 1.69 | -2.14 | -2.5 | -1.29 | 3.15 | 27.62 | 4668 | -- | -- |
| 223.05 | 0.696 | 7.81 | -1.93 | 0.654 | 1.49 | -2.25 | -- | -1.3 | 3.18 | 26.6 | 6035 | -- | -- |
| 234.06 | 0.713 | 7.85 | -2.38 | 0.7 | 1.66 | -- | -2.39 | -1.24 | 3.59 | 27.95 | 4707 | -- | -- |
| 237.74 | 0.718 | 7.81 | -1.85 | 0.664 | 1.47 | -- | -- | -1.28 | 3.52 | 26.5 | 6049 | -- | -- |
| 257.72 | 0.748 | 7.83 | -2.25 | -- | 1.68 | -- | -2.35 | -1.16 | -- | 28.42 | 4355 | -- | -- |
| 292.4 | 0.802 | 7.74 | -1.28 | 0.653 | -- | -1.99 | -- | -0.959 | 2.98 | -- | -- | -- | -- |
| 305.62 | 0.819 | 7.73 | -1.24 | 0.651 | -- | -- | -- | -0.947 | 3.25 | -- | -- | -- | -- |
| 255.5 | 0.744 | 7.81 | -1.89 | -- | 1.56 | -- | -- | -1.26 | -- | 25.6 | 5561 | -- | -- |
| 303.13 | 0.811 | 7.71 | -- | 0.652 | 1.17 | -- | -- | -0.841 | 3.79 | 28.85 | 4839 | -- | -- |
| 329.64 | 0.848 | 7.73 | -1.21 | -- | -- | -- | -- | -0.93 | -- | -- | -- | -- | -- |
| 346.09 | 0.87 | 7.7 | -- | 0.627 | -- | -- | -- | -0.809 | 3.25 | -- | -- | -- | -- |
| 323.36 | 0.838 | 7.7 | -- | -- | 0.984 | -- | -- | -0.774 | -- | 29.3 | 5663 | -- | -- |
| 368.36 | 0.896 | 7.7 | -- | -- | -- | -- | -- | -0.796 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 212.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 7 | 213.51 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 23 | 215.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 28 | 215.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 80 | 219.12 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 83 | 219.17 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 87 | 219.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 93 | 219.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 94 | 219.71 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 116 | 220.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 128 | 220.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 152 | 221.30 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |
| 179 | 221.85 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 181 | 221.92 | temperature | 25 | 4320 | > th | dose independent | sin | 6 | NA |
| 194 | 222.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 198 | 222.19 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 199 | 222.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 12 |
| 211 | 222.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 20 |
| 242 | 222.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 248 | 222.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 254 | 222.64 | temperature | 25 | 4320 | < th | dose independent | sin | 6 | NA |
| 272 | 222.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 278 | 222.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 297 | 222.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 12 |
| 306 | 222.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 338 | 223.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 14 |
| 343 | 223.11 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 344 | 223.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 348 | 223.11 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 22 |
| 371 | 223.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 6 |
| 407 | 223.29 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 416 | 223.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 418 | 223.31 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 20 |
| 444 | 223.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 447 | 223.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 449 | 223.38 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 509 | 223.50 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 649 | 223.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 716 | 223.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 730 | 223.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 741 | 223.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 20 |
| 825 | 224.13 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 853 | 224.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 19 |