Os12g0270200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thiamine biosynthesis protein ThiC family protein.
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Os12g0270200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thiamine biosynthesis protein ThiC family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.26 | 0.526 | 13 | -1.21 | 4.95 | -1.87 | -1.11 | -0.653 | -0.594 | 18.5 | 20.3 | 694 | 21.1 | 4.27 |
| 126.39 | 0.524 | 13 | -1.12 | 5.01 | -1.83 | -0.733 | -- | -0.586 | 18.5 | 20.31 | 693 | 21 | 4.28 |
| 127.38 | 0.526 | 13 | -1.18 | 4.97 | -1.86 | -- | -0.226 | -0.607 | 18.5 | 20.38 | 691 | 21 | 4.34 |
| 127.04 | 0.525 | 13 | -1.11 | 5.01 | -1.84 | -- | -- | -0.584 | 18.5 | 20.39 | 697 | 20.7 | 4.63 |
| 258.74 | 0.749 | 13 | -1.71 | -- | -7.26 | -- | 2.97 | -1.04 | -- | 13.02 | 551 | 21.1 | 9 |
| 201.97 | 0.666 | 13.1 | -1.48 | 6.78 | -- | -0.00904 | -- | -0.846 | 18 | -- | -- | -- | -- |
| 201.97 | 0.666 | 13.1 | -1.48 | 6.78 | -- | -- | -- | -0.846 | 18 | -- | -- | -- | -- |
| 200.33 | 0.659 | 13 | -1.54 | -- | -6.26 | -- | -- | -0.843 | -- | 7.241 | 440 | 21 | 10.8 |
| 159.39 | 0.588 | 13 | -- | 5 | -1.89 | -- | -- | -0.529 | 18.4 | 20.5 | 718 | 20.6 | 4.73 |
| 2583.04 | 2.37 | 13 | -1.68 | -- | -- | -- | -- | -1 | -- | -- | -- | -- | -- |
| 259.53 | 0.754 | 13.1 | -- | 6.8 | -- | -- | -- | -0.682 | 18 | -- | -- | -- | -- |
| 253.66 | 0.742 | 12.9 | -- | -- | -6.28 | -- | -- | -0.701 | -- | 8.536 | 432 | 21.1 | 10.8 |
| 2657.07 | 2.41 | 13 | -- | -- | -- | -- | -- | -0.814 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.05 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 4 |
| 2 | 128.64 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 20 |
| 5 | 129.20 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 15 |
| 6 | 129.20 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 18 |
| 13 | 132.19 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 4 |
| 18 | 133.41 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 11 |
| 40 | 136.96 | temperature | 20 | 720 | > th | dose independent | sin | 14 | NA |
| 42 | 137.01 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 1 |
| 63 | 139.35 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 14 |
| 66 | 139.54 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 13 |
| 81 | 140.35 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 103 | 141.32 | temperature | 20 | 720 | < th | dose independent | sin | 14 | NA |
| 133 | 142.60 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 148 | 143.22 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 166 | 143.80 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 20 |
| 175 | 144.16 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 16 |
| 202 | 144.72 | temperature | 25 | 90 | < th | dose dependent | rect. | 22 | 13 |
| 237 | 145.39 | temperature | 20 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 252 | 145.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 289 | 146.26 | temperature | 30 | 10 | < th | dose dependent | sin | 8 | NA |
| 298 | 146.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 315 | 146.86 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 18 |
| 332 | 147.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 13 |
| 359 | 147.44 | temperature | 20 | 270 | < th | dose dependent | sin | 11 | NA |
| 368 | 147.54 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 7 |
| 497 | 148.81 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 656 | 150.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 687 | 150.40 | temperature | 10 | 10 | > th | dose dependent | sin | 9 | NA |
| 718 | 150.66 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 22 |
| 719 | 150.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 739 | 150.79 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 20 |
| 766 | 150.94 | temperature | 20 | 720 | < th | dose dependent | sin | 18 | NA |
| 912 | 151.95 | temperature | 20 | 90 | < th | dose dependent | rect. | 23 | 6 |