BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0270200 Os12g0270200|J090007L18
         (142 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29630.2  | chr2:12667395-12669569 FORWARD LENGTH=645          236   3e-63

>AT2G29630.2 | chr2:12667395-12669569 FORWARD LENGTH=645
          Length = 644

 Score =  236 bits (602), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 110/138 (79%), Positives = 123/138 (89%)

Query: 2   GMISYKIAAHAADLAKCHPYAQAWDDTLSKARFEFRWLDQFALYLDPVTTMSFHDETLPS 61
           G+I+YKIAAHAADLAK HP+AQAWDD LSKARFEFRW+DQFAL LDP+T MSFHDETLP+
Sbjct: 502 GVIAYKIAAHAADLAKQHPHAQAWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPA 561

Query: 62  EGAKVAHFCSMCGPKSCSMKITEDIRKYADEHGYRIVEEAVIPGMNAMSAEFLAARKTIS 121
           +GAKVAHFCSMCGPK CSMKITEDIRKYA+E+GY   EEA+  GM+AMS EF  A+KTIS
Sbjct: 562 DGAKVAHFCSMCGPKFCSMKITEDIRKYAEENGYGSAEEAIRQGMDAMSEEFNIAKKTIS 621

Query: 122 GEQHGEAGGEIYVPESYT 139
           GEQHGE GGEIY+PESY 
Sbjct: 622 GEQHGEVGGEIYLPESYV 639



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,073,789
Number of extensions: 110584
Number of successful extensions: 272
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)