Os12g0263500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NmrA-like family protein.
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Os12g0263500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NmrA-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.35 | 0.424 | 10.7 | -1.23 | 0.966 | 0.681 | -0.835 | 0.402 | 0.0584 | 23.6 | 21.73 | 742 | -- | -- |
| 81.82 | 0.421 | 10.7 | -1.31 | 0.964 | 0.656 | -0.719 | -- | 0.0428 | 23.6 | 21.8 | 739 | -- | -- |
| 83.94 | 0.427 | 10.7 | -1.27 | 0.997 | 0.654 | -- | 0.136 | 0.0501 | 23.8 | 21.77 | 627 | -- | -- |
| 84.01 | 0.427 | 10.7 | -1.3 | 0.995 | 0.652 | -- | -- | 0.0406 | 23.7 | 21.8 | 627 | -- | -- |
| 141.62 | 0.554 | 10.7 | -1.46 | -- | 0.79 | -- | -0.49 | -0.0255 | -- | 24.8 | 915 | -- | -- |
| 99.37 | 0.467 | 10.6 | -1.1 | 1.08 | -- | -0.753 | -- | 0.234 | 23.4 | -- | -- | -- | -- |
| 101.82 | 0.473 | 10.6 | -1.07 | 1.09 | -- | -- | -- | 0.237 | 23.4 | -- | -- | -- | -- |
| 139.4 | 0.55 | 10.7 | -1.38 | -- | 0.936 | -- | -- | -0.0419 | -- | 21.89 | 812 | -- | -- |
| 124.75 | 0.52 | 10.6 | -- | 1.01 | 0.386 | -- | -- | 0.245 | 23.6 | 22.4 | 552 | -- | -- |
| 175.72 | 0.619 | 10.6 | -1.05 | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
| 132.19 | 0.538 | 10.6 | -- | 1.07 | -- | -- | -- | 0.357 | 23.4 | -- | -- | -- | -- |
| 185.22 | 0.634 | 10.6 | -- | -- | 0.646 | -- | -- | 0.185 | -- | 21.96 | 790 | -- | -- |
| 204.53 | 0.668 | 10.6 | -- | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 6 | 83.93 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 12 | 84.09 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 22 | 84.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 29 | 84.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 65 | 84.80 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 76 | 84.89 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 80 | 84.92 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 104 | 85.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 193 | 85.74 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 196 | 85.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 214 | 85.87 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 239 | 85.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 240 | 85.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 241 | 86.00 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 257 | 86.08 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 261 | 86.09 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 275 | 86.16 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 282 | 86.21 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 285 | 86.24 | wind | 1 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 291 | 86.27 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 306 | 86.31 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 328 | 86.42 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 334 | 86.45 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 341 | 86.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 365 | 86.55 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 374 | 86.58 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 378 | 86.59 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 394 | 86.63 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 16 |
| 398 | 86.64 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 407 | 86.65 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 449 | 86.74 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 457 | 86.75 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 482 | 86.80 | wind | 3 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 509 | 86.86 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 517 | 86.87 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 568 | 86.97 | wind | 1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 589 | 87.01 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 6 |
| 600 | 87.04 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 9 |
| 618 | 87.07 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 679 | 87.15 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 703 | 87.19 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 735 | 87.24 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 755 | 87.28 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 758 | 87.28 | wind | 3 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 762 | 87.29 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 884 | 87.49 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 885 | 87.49 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 896 | 87.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 917 | 87.52 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 924 | 87.53 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 941 | 87.55 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 950 | 87.56 | wind | 3 | 14400 | < th | dose dependent | sin | 9 | NA |
| 966 | 87.58 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 22 |