BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0263500 Os12g0263500|J065152G10
(104 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32100.1 | chr1:11546472-11547953 REVERSE LENGTH=318 99 6e-22
AT4G13660.1 | chr4:7946283-7948252 FORWARD LENGTH=318 88 1e-18
AT1G75290.1 | chr1:28253890-28255173 FORWARD LENGTH=319 62 6e-11
AT1G75280.1 | chr1:28252030-28253355 FORWARD LENGTH=311 59 7e-10
AT1G19540.1 | chr1:6765713-6767247 FORWARD LENGTH=311 58 8e-10
AT4G39230.1 | chr4:18266024-18267604 REVERSE LENGTH=309 57 1e-09
AT4G34540.1 | chr4:16500506-16501932 FORWARD LENGTH=307 54 2e-08
AT1G75300.1 | chr1:28255552-28256927 FORWARD LENGTH=323 53 3e-08
>AT1G32100.1 | chr1:11546472-11547953 REVERSE LENGTH=318
Length = 317
Score = 98.6 bits (244), Expect = 6e-22, Method: Composition-based stats.
Identities = 43/60 (71%), Positives = 50/60 (83%)
Query: 5 GRVTFDEKMEIRRAIENANIPHTYVSANCFAAYFSPNLCQMKTLLPPKERVGVYGDGNVK 64
GR TFD+KME+R+AIE A IP+TYV CFAAYF+ NL QM TLLPPKE+V +YGDGNVK
Sbjct: 137 GRETFDQKMEVRQAIEAAGIPYTYVVGACFAAYFAGNLSQMVTLLPPKEKVNIYGDGNVK 196
>AT4G13660.1 | chr4:7946283-7948252 FORWARD LENGTH=318
Length = 317
Score = 87.8 bits (216), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/60 (65%), Positives = 44/60 (73%)
Query: 5 GRVTFDEKMEIRRAIENANIPHTYVSANCFAAYFSPNLCQMKTLLPPKERVGVYGDGNVK 64
G TFD+KMEIR AI+ A I HTY+ CFAAYF NL QM TL PPK +V +YGDGNVK
Sbjct: 137 GSETFDQKMEIRNAIKAAGISHTYLVGACFAAYFGGNLSQMGTLFPPKNKVDIYGDGNVK 196
>AT1G75290.1 | chr1:28253890-28255173 FORWARD LENGTH=319
Length = 318
Score = 62.0 bits (149), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 5 GRVTFDEKMEIRRAIENANIPHTYVSANCFAAYFSPNLCQMKTLL--PPKERVGVYGDGN 62
+ F K++ RR IE IP+TY+ N FA Y+ P L Q++ L PP+++V ++GDGN
Sbjct: 127 AKSAFGRKLQTRRDIEAEGIPYTYLVTNYFAGYYLPTLVQLEPGLTSPPRDKVKIFGDGN 186
Query: 63 VKG 65
VK
Sbjct: 187 VKA 189
>AT1G75280.1 | chr1:28252030-28253355 FORWARD LENGTH=311
Length = 310
Score = 58.5 bits (140), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 6 RVTFDEKMEIRRAIENANIPHTYVSANCFAAYFSPNLCQMKTLL--PPKERVGVYGDGNV 63
+ F K++IRR IE IP+TY CF Y+ P L Q + L PP+++V + GDGN
Sbjct: 128 KSAFAGKIQIRRTIEAEGIPYTYAVTGCFGGYYLPTLVQFEPGLTSPPRDKVTILGDGNA 187
Query: 64 K 64
K
Sbjct: 188 K 188
>AT1G19540.1 | chr1:6765713-6767247 FORWARD LENGTH=311
Length = 310
Score = 58.2 bits (139), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 9 FDEKMEIRRAIENANIPHTYVSANCFAAYFSPNL--CQMKTLLPPKERVGVYGDGNVKG 65
F K +IRRAIE A IP+TYV + CFA F P L C ++ PP+++V +Y GN K
Sbjct: 130 FITKAQIRRAIEAAKIPYTYVVSGCFAGLFVPCLGQCHLRLRSPPRDKVSIYDTGNGKA 188
>AT4G39230.1 | chr4:18266024-18267604 REVERSE LENGTH=309
Length = 308
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 35/61 (57%)
Query: 5 GRVTFDEKMEIRRAIENANIPHTYVSANCFAAYFSPNLCQMKTLLPPKERVGVYGDGNVK 64
+ + K +IRR IE IP+TYVS N FA YF P L Q P+++V V GDGN K
Sbjct: 126 AKSAYATKAKIRRTIEAEGIPYTYVSCNFFAGYFLPTLAQPGATSAPRDKVIVLGDGNPK 185
Query: 65 G 65
Sbjct: 186 A 186
>AT4G34540.1 | chr4:16500506-16501932 FORWARD LENGTH=307
Length = 306
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 9 FDEKMEIRRAIENANIPHTYVSANCFAAYFSPNLCQMKTLLPPKERVGVYGDGNVKGKKV 68
+ +K EIR IE+ IP+TY+ F P+L Q PP ++V V+GDGNVK V
Sbjct: 128 YSKKSEIRHMIESEGIPYTYICCGLFMRVLLPSLVQPGLQSPPTDKVTVFGDGNVKAVFV 187
Query: 69 NYLSINCCFIALI 81
N + + I I
Sbjct: 188 NDVDVAAFTIKTI 200
>AT1G75300.1 | chr1:28255552-28256927 FORWARD LENGTH=323
Length = 322
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 16/72 (22%)
Query: 9 FDEKMEIRRAIENANIPHTYVSANCFAAYFSPNLCQMKTLL----------------PPK 52
F K++IRRAIE IP+TYV +NC A ++ L Q ++ L PP+
Sbjct: 131 FAGKVQIRRAIEAEGIPYTYVVSNCSAGFYLRTLLQFESGLISHTRDKAIIFGDKNVPPR 190
Query: 53 ERVGVYGDGNVK 64
++V + GDGN K
Sbjct: 191 DKVTILGDGNAK 202
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.332 0.144 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,301,795
Number of extensions: 84871
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 8
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 104 (44.7 bits)