Os12g0263200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NmrA-like family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0263200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : NmrA-like family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.15 | 0.349 | 11.9 | -0.739 | 2.07 | -1.26 | 1.63 | -1.44 | -0.0371 | 5.81 | 23.93 | 353 | -- | -- |
| 57.29 | 0.353 | 12 | -0.833 | 2.12 | -0.97 | 1.5 | -- | -0.0455 | 5.88 | 24.9 | 448 | -- | -- |
| 60.97 | 0.364 | 12 | -0.799 | 2.05 | -1.14 | -- | -0.704 | -0.0417 | 5.75 | 24.2 | 360 | -- | -- |
| 61.08 | 0.364 | 12 | -0.928 | 2.08 | -1.08 | -- | -- | -0.0965 | 5.8 | 24.5 | 413 | -- | -- |
| 260.32 | 0.751 | 12 | -0.888 | -- | -1.21 | -- | -1.28 | -0.0567 | -- | 24.86 | 4211 | -- | -- |
| 73.1 | 0.401 | 11.9 | -0.673 | 1.97 | -- | 1.37 | -- | 0.112 | 5.85 | -- | -- | -- | -- |
| 77.62 | 0.413 | 11.9 | -0.664 | 1.97 | -- | -- | -- | 0.106 | 5.79 | -- | -- | -- | -- |
| 256.49 | 0.746 | 12 | -1.08 | -- | -1.12 | -- | -- | -0.136 | -- | 26.99 | 2748 | -- | -- |
| 81.82 | 0.421 | 11.9 | -- | 2.03 | -0.683 | -- | -- | 0.07 | 5.82 | 24.5 | 406 | -- | -- |
| 279.8 | 0.782 | 12 | -0.603 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 89.25 | 0.442 | 11.9 | -- | 1.96 | -- | -- | -- | 0.18 | 5.8 | -- | -- | -- | -- |
| 277.15 | 0.775 | 12 | -- | -- | -0.791 | -- | -- | 0.103 | -- | 37.29 | 1286 | -- | -- |
| 289.4 | 0.794 | 11.9 | -- | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 14 | 48.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 23 | 49.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 28 | 49.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 40 | 49.75 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 47 | 49.99 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 58 | 50.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 63 | 50.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 67 | 50.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 87 | 50.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 3 |
| 93 | 50.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 6 |
| 197 | 51.75 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 231 | 52.13 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 5 |
| 261 | 52.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 281 | 52.60 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 2 |
| 283 | 52.61 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 11 |
| 433 | 53.74 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 601 | 54.80 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 657 | 55.08 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 680 | 55.18 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 715 | 55.33 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 12 |
| 736 | 55.47 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 20 |
| 764 | 55.59 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 778 | 55.65 | temperature | 10 | 10 | > th | dose dependent | sin | 11 | NA |
| 808 | 55.74 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 12 |
| 812 | 55.75 | temperature | 25 | 30 | < th | dose dependent | sin | 10 | NA |
| 825 | 55.78 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 839 | 55.82 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 13 |
| 881 | 55.98 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 20 |
| 882 | 55.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 934 | 56.10 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 2 |