BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0263200 Os12g0263200|J013124D02
(211 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32100.1 | chr1:11546472-11547953 REVERSE LENGTH=318 271 2e-73
AT4G13660.1 | chr4:7946283-7948252 FORWARD LENGTH=318 254 2e-68
AT1G75290.1 | chr1:28253890-28255173 FORWARD LENGTH=319 158 2e-39
AT1G75280.1 | chr1:28252030-28253355 FORWARD LENGTH=311 157 3e-39
AT4G39230.1 | chr4:18266024-18267604 REVERSE LENGTH=309 145 1e-35
AT1G75300.1 | chr1:28255552-28256927 FORWARD LENGTH=323 145 1e-35
AT1G19540.1 | chr1:6765713-6767247 FORWARD LENGTH=311 136 9e-33
AT4G34540.1 | chr4:16500506-16501932 FORWARD LENGTH=307 111 3e-25
>AT1G32100.1 | chr1:11546472-11547953 REVERSE LENGTH=318
Length = 317
Score = 271 bits (693), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 127/189 (67%), Positives = 150/189 (79%)
Query: 4 EKSRVLIVGGTGYIGRRIVAASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARLLEA 63
EK+RVL+VG TGYIG+RIV A LAEGH T+VL RPEIGL+I+K+Q+ L+FK GAR++E
Sbjct: 8 EKTRVLVVGATGYIGKRIVRACLAEGHETYVLQRPEIGLEIEKVQLFLSFKKLGARIVEG 67
Query: 64 SLDDHDGLXXXXXXXXXXXXXMSGVHLRSHNLMLQLKLVEAIKEAGNVKRFLPSEFGMDP 123
S DH L MSGVH RSHN+++QLKLVEAIKEAGNVKRFLPSEFGMDP
Sbjct: 68 SFSDHQSLVSAVKLVDVVVSAMSGVHFRSHNILVQLKLVEAIKEAGNVKRFLPSEFGMDP 127
Query: 124 SRMGNALEPGRVTFDEKMEIRRAIEDAKIPHTYVSSNCFAAYFCPNLSQLTSFLPPKERV 183
RMG+AL PGR TFD+KME+R+AIE A IP+TYV CFAAYF NLSQ+ + LPPKE+V
Sbjct: 128 PRMGHALPPGRETFDQKMEVRQAIEAAGIPYTYVVGACFAAYFAGNLSQMVTLLPPKEKV 187
Query: 184 NVYGDGNVK 192
N+YGDGNVK
Sbjct: 188 NIYGDGNVK 196
>AT4G13660.1 | chr4:7946283-7948252 FORWARD LENGTH=318
Length = 317
Score = 254 bits (650), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 121/189 (64%), Positives = 145/189 (76%)
Query: 4 EKSRVLIVGGTGYIGRRIVAASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARLLEA 63
EK+RVL+VGGTG +GRRIV+A LAEGH T+VL RPEIG+DI+K+Q+LL+FK GA L+E
Sbjct: 8 EKTRVLVVGGTGSLGRRIVSACLAEGHETYVLQRPEIGVDIEKVQLLLSFKRLGAHLVEG 67
Query: 64 SLDDHDGLXXXXXXXXXXXXXMSGVHLRSHNLMLQLKLVEAIKEAGNVKRFLPSEFGMDP 123
S DH L MSGVH R+HN+ +QLKLV AIKEAGNVKRFLPSEFGMDP
Sbjct: 68 SFSDHQSLVSAVKQVDVVVSAMSGVHFRTHNIPVQLKLVAAIKEAGNVKRFLPSEFGMDP 127
Query: 124 SRMGNALEPGRVTFDEKMEIRRAIEDAKIPHTYVSSNCFAAYFCPNLSQLTSFLPPKERV 183
SRMG+A+ PG TFD+KMEIR AI+ A I HTY+ CFAAYF NLSQ+ + PPK +V
Sbjct: 128 SRMGHAMPPGSETFDQKMEIRNAIKAAGISHTYLVGACFAAYFGGNLSQMGTLFPPKNKV 187
Query: 184 NVYGDGNVK 192
++YGDGNVK
Sbjct: 188 DIYGDGNVK 196
>AT1G75290.1 | chr1:28253890-28255173 FORWARD LENGTH=319
Length = 318
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 8/195 (4%)
Query: 1 MAMEKSRVLIVGGTGYIGRRIVAASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARL 60
MA EKS++L++GGTG+IG+ I+ AS+ GH T L+R D +K + + FK G L
Sbjct: 1 MASEKSKILVIGGTGHIGKLIIEASVKAGHSTLALVREASLSDPNKGKTVQNFKDFGVTL 60
Query: 61 LEASLDDHDGLXXXXXXXXXXXXXMSGVHLRSHNLMLQLKLVEAIKEAGNVKRFLPSEFG 120
L L+DH+ L + S ++ Q K++ AIKEAGNVKRFLPSEFG
Sbjct: 61 LHGDLNDHESLVKAIKQADVVISTVG-----SMQILDQTKIISAIKEAGNVKRFLPSEFG 115
Query: 121 MDPSRMGNALEPGRVTFDEKMEIRRAIEDAKIPHTYVSSNCFAAYFCPNLSQLTSFL--P 178
MD + +A+EP + F K++ RR IE IP+TY+ +N FA Y+ P L QL L P
Sbjct: 116 MDVDK-SSAVEPAKSAFGRKLQTRRDIEAEGIPYTYLVTNYFAGYYLPTLVQLEPGLTSP 174
Query: 179 PKERVNVYGDGNVKG 193
P+++V ++GDGNVK
Sbjct: 175 PRDKVKIFGDGNVKA 189
>AT1G75280.1 | chr1:28252030-28253355 FORWARD LENGTH=311
Length = 310
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 114/195 (58%), Gaps = 8/195 (4%)
Query: 1 MAMEKSRVLIVGGTGYIGRRIVAASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARL 60
MA EKS++L++GGTGYIG+ +V AS GH TF L+R D K + + +FK G +
Sbjct: 1 MATEKSKILVIGGTGYIGKFLVEASAKAGHSTFALVREATLSDPVKGKTVQSFKDLGVTI 60
Query: 61 LEASLDDHDGLXXXXXXXXXXXXXMSGVHLRSHNLMLQLKLVEAIKEAGNVKRFLPSEFG 120
L L+DH+ L + S ++ Q K++ AIKEAGNVKRFLPSEFG
Sbjct: 61 LHGDLNDHESLVKAIKQVDVVISTVG-----SMQILDQTKIISAIKEAGNVKRFLPSEFG 115
Query: 121 MDPSRMGNALEPGRVTFDEKMEIRRAIEDAKIPHTYVSSNCFAAYFCPNLSQLTSFL--P 178
+D R +A+EP + F K++IRR IE IP+TY + CF Y+ P L Q L P
Sbjct: 116 VDVDRT-SAVEPAKSAFAGKIQIRRTIEAEGIPYTYAVTGCFGGYYLPTLVQFEPGLTSP 174
Query: 179 PKERVNVYGDGNVKG 193
P+++V + GDGN K
Sbjct: 175 PRDKVTILGDGNAKA 189
>AT4G39230.1 | chr4:18266024-18267604 REVERSE LENGTH=309
Length = 308
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 105/189 (55%), Gaps = 6/189 (3%)
Query: 5 KSRVLIVGGTGYIGRRIVAASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARLLEAS 64
KS++L +GGTGYIG+ IV AS GHPT VL+R + + FK G + L
Sbjct: 4 KSKILFIGGTGYIGKYIVEASARSGHPTLVLVRNSTLTSPSRSSTIENFKNLGVQFLLGD 63
Query: 65 LDDHDGLXXXXXXXXXXXXXMSGVHLRSHNLMLQLKLVEAIKEAGNVKRFLPSEFGMDPS 124
LDDH L + G L H Q K++ AIKEAGNVKRF PSEFG D
Sbjct: 64 LDDHTSLVNSIKQADVVISTV-GHSLLGH----QYKIISAIKEAGNVKRFFPSEFGNDVD 118
Query: 125 RMGNALEPGRVTFDEKMEIRRAIEDAKIPHTYVSSNCFAAYFCPNLSQLTSFLPPKERVN 184
R+ +EP + + K +IRR IE IP+TYVS N FA YF P L+Q + P+++V
Sbjct: 119 RVF-TVEPAKSAYATKAKIRRTIEAEGIPYTYVSCNFFAGYFLPTLAQPGATSAPRDKVI 177
Query: 185 VYGDGNVKG 193
V GDGN K
Sbjct: 178 VLGDGNPKA 186
>AT1G75300.1 | chr1:28255552-28256927 FORWARD LENGTH=323
Length = 322
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 113/208 (54%), Gaps = 22/208 (10%)
Query: 1 MAMEKSRVLIVGGTGYIGRRIVAASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARL 60
M EKS++L++GGTGY+G IV S G+PTF L+R D K + + +FK G +
Sbjct: 1 MTTEKSKILVIGGTGYMGEFIVEGSAKAGNPTFALVREASLSDPVKSKTIQSFKDLGVTI 60
Query: 61 LEASLDDHDGLXXXXXXXXXXXXXMSGVHLRSHNLMLQLKLVEAIKEAGNVKRFLPSEFG 120
L L+DH+ L + + Q K++ AIKEAGNVKRFLP+EFG
Sbjct: 61 LHGDLNDHESLVKAIKQVDVVISTIG-----HKQIFDQTKIISAIKEAGNVKRFLPAEFG 115
Query: 121 MDPSRMGNALEPGRVTFDEKMEIRRAIEDAKIPHTYVSSNCFAAYFCPNLSQLTSFL--- 177
+D R +A+EP + F K++IRRAIE IP+TYV SNC A ++ L Q S L
Sbjct: 116 IDVERT-SAVEPAKSLFAGKVQIRRAIEAEGIPYTYVVSNCSAGFYLRTLLQFESGLISH 174
Query: 178 -------------PPKERVNVYGDGNVK 192
PP+++V + GDGN K
Sbjct: 175 TRDKAIIFGDKNVPPRDKVTILGDGNAK 202
>AT1G19540.1 | chr1:6765713-6767247 FORWARD LENGTH=311
Length = 310
Score = 136 bits (342), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 107/190 (56%), Gaps = 6/190 (3%)
Query: 6 SRVLIVGGTGYIGRRIVAASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARLLEASL 65
S++L++G TG IG+ +V S GH TF L+R D K Q++ FK G +L SL
Sbjct: 3 SKILVIGATGLIGKVLVEESAKSGHATFALVREASLSDPVKAQLVERFKDLGVTILYGSL 62
Query: 66 DDHDGLXXXXXXXXXXXXXMSGVHLRSHNLMLQLKLVEAIKEAGNVKRFLPSEFGMDPSR 125
D + L +S V ++ Q +++AIKE+GNVKRFLPSEFG D R
Sbjct: 63 SDKESLVKAIKQVDVV---ISAVGRFQTEILNQTNIIDAIKESGNVKRFLPSEFGNDVDR 119
Query: 126 MGNALEPGRVTFDEKMEIRRAIEDAKIPHTYVSSNCFAAYFCPNLSQLTSFL--PPKERV 183
A+EP F K +IRRAIE AKIP+TYV S CFA F P L Q L PP+++V
Sbjct: 120 TV-AIEPTLSEFITKAQIRRAIEAAKIPYTYVVSGCFAGLFVPCLGQCHLRLRSPPRDKV 178
Query: 184 NVYGDGNVKG 193
++Y GN K
Sbjct: 179 SIYDTGNGKA 188
>AT4G34540.1 | chr4:16500506-16501932 FORWARD LENGTH=307
Length = 306
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 99/194 (51%), Gaps = 11/194 (5%)
Query: 4 EKSRVLIVGGTGYIGRRIVAASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARLLEA 63
+KSRVLI+G TG +G + S+ GHPTF L+R L DKL+ + G LL+
Sbjct: 6 KKSRVLIIGATGRLGNYLTRFSIESGHPTFALIR-NTTLS-DKLK---SLSDAGVTLLKG 60
Query: 64 SLDDHDGLXXXXXXXXXXXXXMSGVHLRSHNLMLQLKLVEAIKEAGNVKRFLPSEFGMDP 123
SL+D L + H+ L LV IK+AG++KRF+P+E+G +P
Sbjct: 61 SLEDEGSLAEAVSKVDVVISAIPSKHVLDQKL-----LVRVIKQAGSIKRFIPAEYGANP 115
Query: 124 SRMGNALEPGRVTFDEKMEIRRAIEDAKIPHTYVSSNCFAAYFCPNLSQLTSFLPPKERV 183
+ + + +K EIR IE IP+TY+ F P+L Q PP ++V
Sbjct: 116 DKT-QVSDLDHDFYSKKSEIRHMIESEGIPYTYICCGLFMRVLLPSLVQPGLQSPPTDKV 174
Query: 184 NVYGDGNVKGKKVN 197
V+GDGNVK VN
Sbjct: 175 TVFGDGNVKAVFVN 188
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,207,593
Number of extensions: 156698
Number of successful extensions: 378
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 8
Length of query: 211
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 117
Effective length of database: 8,529,465
Effective search space: 997947405
Effective search space used: 997947405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)