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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0263100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zinc finger, DHHC domain containing 4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0401) R2 : 0.0877
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.559 (0.0844) R2dN8 : 0.113 R2N8 : 0.0877
σ : 0.755
deviance : 261.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.35 0.701 4.52 2 0.476 97.5 -0.804 202 0.509 8.4 15 706 -- --
229.38 0.711 3.3 -0.638 0.492 1.46 -0.913 -- 0.489 8.54 15.17 22 -- --
224.2 0.697 4.51 1.98 0.482 97.7 -- 203 0.514 8.77 15 697 -- --
231.91 0.714 3.3 -0.67 0.491 1.32 -- -- 0.489 8.88 14.72 26 -- --
236.3 0.716 4.48 1.82 -- 98.1 -- 203 0.482 -- 15 634 -- --
233.39 0.716 3.3 -0.699 0.476 -- -0.813 -- 0.474 8.33 -- -- -- --
235.3 0.718 3.3 -0.721 0.475 -- -- -- 0.475 8.75 -- -- -- --
245.54 0.73 3.31 -0.665 -- 1.12 -- -- 0.491 -- 14.8 62 -- --
243.23 0.726 3.28 -- 0.489 1.67 -- -- 0.57 8.98 14.71 101 -- --
248.11 0.736 3.32 -0.72 -- -- -- -- 0.479 -- -- -- -- --
248.99 0.738 3.29 -- 0.474 -- -- -- 0.556 8.86 -- -- -- --
256.79 0.746 3.29 -- -- 1.48 -- -- 0.571 -- 14.71 207 -- --
261.79 0.755 3.3 -- -- -- -- -- 0.559 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 208.73 radiation 20.0 10 < th dose independent rect. 4 7
5 210.96 humidity 50.0 270 > th dose dependent rect. 18 13
9 211.90 temperature 15.0 720 > th dose independent rect. 23 4
13 213.07 precipitation 0.1 720 < th dose independent rect. 7 20
14 213.07 precipitation 0.1 720 < th dose dependent rect. 7 20
16 213.12 radiation 30.0 10 < th dose dependent rect. 4 6
20 213.56 temperature 15.0 270 > th dose independent rect. 22 13
21 213.64 humidity 80.0 720 > th dose independent rect. 3 4
26 213.93 atmosphere 1010.0 10 < th dose independent rect. 9 19
29 214.15 temperature 15.0 720 > th dose independent rect. 15 4
31 214.19 humidity 70.0 10 > th dose independent rect. 4 6
33 214.31 precipitation 0.1 720 < th dose independent rect. 15 12
34 214.31 precipitation 0.1 720 < th dose dependent rect. 15 12
42 214.60 precipitation 0.1 270 < th dose independent rect. 22 13
43 214.60 precipitation 0.1 270 < th dose dependent rect. 22 13
46 214.65 temperature 15.0 270 > th dose independent rect. 7 20
50 214.74 precipitation 0.1 720 < th dose independent rect. 15 4
51 214.74 precipitation 0.1 720 < th dose dependent rect. 15 4
52 214.76 precipitation 0.1 720 < th dose independent rect. 23 20
53 214.76 precipitation 0.1 720 < th dose dependent rect. 23 20
55 214.94 wind 9.0 270 < th dose independent rect. 22 13
56 214.97 wind 9.0 270 < th dose independent rect. 11 11
57 214.99 humidity 50.0 270 > th dose independent rect. 22 13
58 215.03 temperature 10.0 270 > th dose independent rect. 11 11
60 215.03 atmosphere 995.0 270 > th dose independent rect. 22 13
63 215.16 temperature 15.0 720 > th dose independent rect. 15 12
64 215.21 humidity 70.0 270 > th dose independent rect. 18 13
75 215.59 temperature 15.0 10 > th dose independent rect. 10 18
76 215.60 radiation 20.0 10 < th dose independent rect. 21 14
77 215.60 atmosphere 995.0 720 > th dose independent rect. 19 20
78 215.61 precipitation 0.1 720 < th dose independent rect. 15 20
79 215.61 precipitation 0.1 720 < th dose dependent rect. 15 20
82 215.66 radiation 10.0 270 < th dose independent rect. 3 4
87 215.70 atmosphere 995.0 270 > th dose independent rect. 11 11
97 215.88 humidity 50.0 30 > th dose dependent rect. 4 6
98 215.90 atmosphere 995.0 270 > th dose dependent rect. 3 4
100 215.96 radiation 30.0 720 < th dose independent rect. 3 4
102 216.03 wind 1.0 720 > th dose independent rect. 15 4
104 216.07 atmosphere 995.0 720 > th dose independent rect. 3 12
105 216.11 wind 9.0 720 < th dose independent rect. 3 4
106 216.11 temperature 10.0 720 > th dose independent rect. 3 4
107 216.11 temperature 30.0 720 < th dose independent rect. 3 4
108 216.11 humidity 50.0 720 > th dose independent rect. 3 4
110 216.11 atmosphere 995.0 720 > th dose independent rect. 3 4
114 216.14 radiation 20.0 10 < th dose independent rect. 4 21
116 216.16 atmosphere 1015.0 720 < th dose independent rect. 15 4
119 216.16 temperature 10.0 720 > th dose independent rect. 19 20
123 216.22 wind 1.0 270 > th dose independent rect. 3 4
129 216.29 temperature 30.0 270 < th dose independent rect. 18 13
132 216.41 radiation 20.0 270 < th dose independent rect. 18 13
145 216.61 wind 9.0 720 < th dose independent rect. 19 20
147 216.61 radiation 40.0 270 < th dose dependent rect. 18 13
148 216.62 precipitation 0.1 270 < th dose independent rect. 7 11
149 216.62 precipitation 0.1 270 < th dose dependent rect. 7 11
151 216.63 precipitation 0.1 270 < th dose independent rect. 11 11
152 216.63 precipitation 0.1 270 < th dose dependent rect. 11 11
155 216.66 atmosphere 995.0 720 > th dose independent rect. 11 4
158 216.67 temperature 10.0 720 > th dose independent rect. 3 12
160 216.68 precipitation 0.1 720 < th dose independent rect. 23 4
161 216.68 precipitation 0.1 720 < th dose dependent rect. 23 4
162 216.69 precipitation 0.1 720 < th dose independent rect. 3 4
163 216.69 precipitation 0.1 720 < th dose dependent rect. 3 4
166 216.71 wind 9.0 270 < th dose independent rect. 18 13
168 216.71 precipitation 0.1 720 < th dose independent rect. 14 14
169 216.71 precipitation 0.1 720 < th dose dependent rect. 14 14
173 216.74 atmosphere 995.0 270 > th dose independent rect. 18 13
176 216.77 temperature 10.0 270 > th dose dependent rect. 3 3
186 216.82 radiation 40.0 720 < th dose dependent rect. 3 4
197 216.93 temperature 10.0 270 > th dose independent rect. 7 11
198 216.93 atmosphere 1015.0 270 < th dose independent rect. 7 11
199 216.93 temperature 10.0 270 > th dose independent rect. 18 13
204 216.94 wind 9.0 720 < th dose independent rect. 3 12
206 216.96 humidity 50.0 720 > th dose independent rect. 19 20
207 216.98 wind 9.0 720 < th dose independent rect. 23 4
209 216.99 temperature 30.0 720 < th dose independent rect. 23 4
210 216.99 humidity 50.0 720 > th dose independent rect. 23 4
213 216.99 atmosphere 995.0 720 > th dose independent rect. 23 4
214 216.99 radiation 1.0 720 < th dose independent rect. 23 4
220 216.99 temperature 10.0 720 > th dose independent rect. 3 20
221 216.99 radiation 1.0 720 < th dose dependent rect. 23 4
228 217.00 temperature 15.0 270 > th dose dependent rect. 4 1
231 217.06 temperature 15.0 30 > th dose independent rect. 7 21
238 217.08 temperature 10.0 30 > th dose dependent rect. 9 19
243 217.13 radiation 20.0 270 < th dose dependent rect. 3 4
245 217.14 wind 9.0 720 < th dose independent rect. 11 4
249 217.16 atmosphere 995.0 10 > th dose dependent rect. 4 6
264 217.26 atmosphere 1015.0 270 < th dose independent rect. 22 13
272 217.32 temperature 10.0 720 > th dose independent rect. 11 4
274 217.32 atmosphere 1015.0 720 < th dose independent rect. 11 4
276 217.32 temperature 10.0 720 > th dose independent rect. 15 20
284 217.39 temperature 10.0 720 > th dose independent rect. 19 4
285 217.39 temperature 30.0 720 < th dose independent rect. 19 4
286 217.39 humidity 50.0 720 > th dose independent rect. 19 4
287 217.39 atmosphere 995.0 720 > th dose independent rect. 19 4
288 217.39 radiation 1.0 720 < th dose independent rect. 19 4
293 217.39 temperature 10.0 720 > th dose independent rect. 23 20
294 217.39 radiation 1.0 720 < th dose dependent rect. 19 4
302 217.41 wind 9.0 720 < th dose independent rect. 19 4
303 217.41 humidity 50.0 720 > th dose independent rect. 3 12
315 217.50 radiation 40.0 720 < th dose independent rect. 15 4
327 217.57 precipitation 0.1 720 < th dose independent rect. 7 4
330 217.57 precipitation 0.1 720 < th dose dependent rect. 7 4
339 217.60 atmosphere 1015.0 720 < th dose independent rect. 3 4
345 217.62 temperature 30.0 270 < th dose independent rect. 22 13
347 217.66 temperature 10.0 720 > th dose independent rect. 7 4
348 217.66 atmosphere 995.0 720 > th dose independent rect. 7 4
349 217.66 atmosphere 1015.0 720 < th dose independent rect. 7 4
351 217.66 temperature 10.0 720 > th dose independent rect. 11 20
353 217.67 humidity 50.0 720 > th dose independent rect. 7 4
355 217.68 radiation 40.0 720 < th dose independent rect. 15 12
357 217.69 temperature 15.0 90 > th dose independent rect. 17 11
362 217.72 atmosphere 1015.0 270 < th dose independent rect. 3 12
364 217.72 radiation 10.0 270 < th dose dependent rect. 4 2
365 217.73 wind 9.0 720 < th dose independent rect. 7 4
398 217.84 wind 1.0 270 > th dose independent rect. 11 11
414 217.92 atmosphere 995.0 720 > th dose independent rect. 3 20
437 218.06 precipitation 0.1 720 < th dose independent rect. 19 4
439 218.06 precipitation 0.1 720 < th dose dependent rect. 19 4
466 218.14 atmosphere 995.0 720 > th dose independent rect. 11 20
470 218.19 temperature 15.0 720 < th dose independent rect. 23 1
483 218.19 temperature 15.0 720 < th dose dependent rect. 23 1
510 218.25 precipitation 0.1 270 < th dose independent rect. 18 13
511 218.25 precipitation 0.1 270 < th dose dependent rect. 18 13
522 218.30 precipitation 0.1 270 < th dose independent rect. 3 12
525 218.30 precipitation 0.1 270 < th dose dependent rect. 3 12
532 218.33 radiation 40.0 270 < th dose dependent rect. 15 12
533 218.34 wind 9.0 270 < th dose independent rect. 7 11
540 218.37 radiation 20.0 10 < th dose independent sin 6 NA
542 218.38 temperature 15.0 30 > th dose dependent rect. 4 5
556 218.44 humidity 50.0 720 > th dose independent rect. 11 4
561 218.47 wind 9.0 720 < th dose independent rect. 3 20
572 218.51 temperature 20.0 270 > th dose independent rect. 4 1
579 218.53 precipitation 0.1 720 < th dose independent rect. 11 4
582 218.53 precipitation 0.1 720 < th dose dependent rect. 11 4
610 218.62 humidity 90.0 720 < th dose independent rect. 15 4
626 218.66 wind 9.0 270 < th dose independent rect. 15 12
629 218.67 precipitation 0.1 90 < th dose independent rect. 9 19
631 218.67 precipitation 0.1 90 < th dose dependent rect. 9 19
636 218.69 wind 9.0 720 < th dose independent rect. 11 20
677 218.84 precipitation 0.1 720 < th dose independent rect. 19 20
678 218.84 precipitation 0.1 720 < th dose dependent rect. 19 20
683 218.86 atmosphere 995.0 720 > th dose independent rect. 15 4
689 218.88 wind 9.0 270 < th dose independent rect. 7 20
691 218.89 atmosphere 1010.0 10 < th dose independent rect. 24 12
702 218.94 wind 1.0 720 > th dose independent rect. 11 4
704 218.95 atmosphere 1015.0 270 < th dose independent rect. 11 11
714 218.98 humidity 50.0 90 > th dose independent rect. 9 19
726 219.02 atmosphere 995.0 720 > th dose independent rect. 7 20
750 219.06 temperature 30.0 10 < th dose dependent rect. 6 1
757 219.10 wind 1.0 720 > th dose independent rect. 19 4
802 219.24 atmosphere 995.0 270 > th dose independent rect. 16 11
808 219.27 wind 9.0 90 < th dose independent rect. 9 19
813 219.29 temperature 15.0 10 > th dose independent rect. 17 11
817 219.30 wind 1.0 720 > th dose independent rect. 7 4
835 219.34 wind 3.0 10 < th dose independent rect. 4 5
838 219.34 precipitation 0.1 10 < th dose independent rect. 10 18
841 219.34 precipitation 0.1 10 < th dose dependent rect. 10 18
846 219.36 wind 9.0 10 < th dose independent rect. 4 6
847 219.36 temperature 10.0 10 > th dose independent rect. 4 6
851 219.36 atmosphere 1015.0 10 < th dose independent rect. 4 6
866 219.39 radiation 10.0 90 < th dose dependent rect. 9 19
873 219.41 wind 9.0 30 < th dose dependent rect. 4 5
875 219.42 wind 1.0 270 > th dose independent rect. 7 20
884 219.45 radiation 20.0 10 < th dose dependent rect. 6 1
888 219.47 precipitation 0.1 10 < th dose independent rect. 4 6
891 219.47 precipitation 0.1 10 < th dose dependent rect. 4 6
900 219.49 atmosphere 995.0 90 > th dose independent rect. 9 19
912 219.50 wind 1.0 270 > th dose independent rect. 3 13
920 219.51 radiation 10.0 10 < th dose dependent rect. 16 12
929 219.52 atmosphere 995.0 270 > th dose independent rect. 7 11
954 219.57 humidity 70.0 10 > th dose dependent rect. 6 1
983 219.63 radiation 20.0 90 < th dose dependent rect. 15 13
991 219.65 humidity 90.0 270 < th dose independent rect. 23 12