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Os12g0239000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.28 (0.0248) R2 : 0.805
β1 : 2.52 (0.0906) R2dD : 0.345 R2D : 0.28
β2 : 2.12 (0.0639) R2dC : 0.473 R2C : 0.441
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.59 (0.0528) R2dN8 : 0.0715 R2N8 : -0.00605
σ : 0.465
deviance : 98.75
__
_____
C
peak time of C : 19.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.25 0.426 8.3 2.35 2.06 0.593 -1.67 -1.23 0.518 20.3 10 254 -- --
87.15 0.435 8.29 2.4 2.12 0.462 -1.37 -- 0.541 20 10.01 207 -- --
90.04 0.442 8.3 2.4 2.06 0.591 -- -0.789 0.516 20.2 10 256 -- --
92.15 0.447 8.3 2.42 2.07 0.602 -- -- 0.534 20.4 10.01 236 -- --
125.82 0.522 8.26 2.57 -- 2.6 -- 1.34 0.445 -- 1.42 876 -- --
91.64 0.449 8.28 2.49 2.12 -- -1.64 -- 0.594 19.3 -- -- -- --
98.75 0.465 8.28 2.52 2.12 -- -- -- 0.59 19.3 -- -- -- --
111.63 0.492 8.24 2.38 -- 2.88 -- -- 0.488 -- 1.31 884 -- --
252.43 0.74 8.33 -- 2.02 0.576 -- -- 0.479 20.2 10.07 251 -- --
336.42 0.857 8.23 2.49 -- -- -- -- 0.554 -- -- -- -- --
266.7 0.764 8.34 -- 2.09 -- -- -- 0.309 19.4 -- -- -- --
240.94 0.723 8.22 -- -- 3.31 -- -- 0.28 -- 0.1311 915 -- --
499.73 1.04 8.29 -- -- -- -- -- 0.278 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.76 temperature 15.0 270 > th dose independent rect. 7 9
2 78.01 humidity 50.0 270 > th dose dependent rect. 3 17
4 78.38 humidity 80.0 270 > th dose independent rect. 3 8
6 78.53 humidity 80.0 270 > th dose independent rect. 3 17
12 78.78 radiation 1.0 270 > th dose independent rect. 7 9
14 78.89 humidity 90.0 270 < th dose independent rect. 7 9
27 79.15 humidity 60.0 90 > th dose dependent rect. 5 17
29 79.22 wind 7.0 270 < th dose independent rect. 7 9
33 79.30 humidity 50.0 270 > th dose dependent rect. 2 9
54 79.68 radiation 30.0 270 < th dose dependent rect. 16 16
66 79.84 humidity 60.0 10 > th dose dependent rect. 6 16
73 79.88 radiation 1.0 270 > th dose independent sin 1 NA
81 79.94 radiation 40.0 270 < th dose dependent rect. 2 8
87 80.00 radiation 10.0 270 < th dose dependent rect. 3 17
90 80.03 humidity 80.0 270 < th dose independent sin 4 NA
93 80.03 humidity 80.0 270 < th dose independent rect. 24 14
100 80.08 radiation 40.0 270 < th dose independent rect. 2 8
104 80.09 radiation 1.0 270 < th dose independent rect. 3 17
106 80.10 humidity 50.0 270 > th dose independent rect. 3 17
108 80.11 radiation 20.0 270 < th dose independent rect. 16 16
120 80.19 humidity 70.0 10 > th dose independent rect. 5 17
121 80.19 wind 9.0 270 < th dose dependent rect. 8 7
141 80.29 humidity 90.0 270 < th dose dependent rect. 7 7
144 80.31 precipitation 0.1 270 < th dose independent rect. 20 7
145 80.31 precipitation 0.1 270 < th dose dependent rect. 20 7
161 80.40 wind 7.0 270 < th dose independent rect. 20 7
166 80.42 temperature 10.0 270 > th dose independent rect. 20 7
167 80.42 temperature 30.0 270 < th dose independent rect. 20 7
168 80.42 humidity 50.0 270 > th dose independent rect. 20 7
171 80.42 atmosphere 995.0 270 > th dose independent rect. 20 7
172 80.42 radiation 1.0 270 < th dose independent rect. 20 7
177 80.42 temperature 10.0 270 > th dose independent rect. 3 17
178 80.42 atmosphere 1015.0 270 < th dose independent rect. 3 17
179 80.42 radiation 1.0 270 < th dose dependent rect. 20 7
191 80.46 humidity 50.0 270 > th dose independent rect. 16 15
193 80.47 radiation 10.0 270 > th dose independent sin 3 NA
209 80.52 radiation 20.0 270 < th dose independent rect. 2 8
269 80.67 radiation 10.0 270 > th dose independent rect. 17 21
273 80.68 wind 7.0 270 < th dose independent rect. 22 15
279 80.70 humidity 90.0 270 < th dose dependent rect. 21 17
298 80.76 humidity 70.0 10 > th dose independent rect. 3 20
338 80.87 radiation 20.0 270 < th dose dependent rect. 1 21
339 80.88 humidity 90.0 10 < th dose dependent rect. 8 8
347 80.90 wind 9.0 270 < th dose independent rect. 3 17
349 80.91 precipitation 0.1 270 < th dose independent rect. 7 9
352 80.91 precipitation 0.1 270 < th dose dependent rect. 7 9
461 81.11 radiation 40.0 270 < th dose independent rect. 3 17
464 81.12 wind 9.0 270 < th dose independent rect. 16 15
479 81.15 atmosphere 995.0 270 > th dose independent rect. 7 9
480 81.15 atmosphere 1015.0 270 < th dose independent rect. 7 9
488 81.15 temperature 10.0 270 > th dose independent rect. 16 15
518 81.18 temperature 15.0 270 > th dose independent rect. 22 15
524 81.20 radiation 40.0 270 < th dose independent rect. 2 19
529 81.21 humidity 90.0 270 < th dose dependent sin 5 NA
555 81.29 wind 9.0 270 < th dose dependent rect. 21 5
561 81.31 precipitation 0.1 270 < th dose independent rect. 3 17
562 81.31 precipitation 0.1 270 < th dose dependent rect. 3 17
563 81.32 humidity 80.0 270 > th dose independent sin 3 NA
582 81.37 wind 7.0 10 < th dose independent rect. 8 9
585 81.37 radiation 1.0 90 < th dose dependent rect. 22 8
614 81.44 wind 9.0 270 < th dose dependent rect. 20 7
617 81.45 radiation 1.0 270 < th dose independent sin 1 NA
621 81.46 radiation 1.0 90 < th dose independent rect. 22 8
673 81.57 wind 1.0 270 > th dose independent rect. 21 6
687 81.61 wind 9.0 14400 < th dose independent rect. 24 4
699 81.63 radiation 40.0 90 < th dose independent rect. 5 17
700 81.63 radiation 10.0 10 < th dose dependent rect. 22 8
720 81.68 atmosphere 995.0 270 > th dose dependent rect. 22 4
734 81.73 temperature 30.0 270 < th dose independent rect. 16 15
741 81.75 atmosphere 995.0 270 > th dose dependent rect. 21 6
758 81.78 atmosphere 995.0 270 > th dose independent rect. 3 17
759 81.78 radiation 1.0 270 < th dose dependent sin 1 NA
771 81.80 humidity 50.0 270 > th dose dependent rect. 21 6
823 81.88 radiation 20.0 270 < th dose independent rect. 3 17
832 81.91 atmosphere 995.0 270 > th dose independent rect. 16 15
860 81.93 precipitation 0.1 270 < th dose independent rect. 9 17
864 81.93 precipitation 0.1 270 < th dose dependent rect. 9 17
869 81.94 precipitation 0.1 270 < th dose independent rect. 16 15
873 81.94 precipitation 0.1 270 < th dose dependent rect. 16 15
891 81.98 temperature 10.0 90 > th dose dependent rect. 8 8
895 81.99 atmosphere 1015.0 270 < th dose independent rect. 21 6
931 82.01 radiation 1.0 270 < th dose dependent rect. 3 9
944 82.03 humidity 90.0 10 < th dose dependent rect. 8 19
965 82.06 wind 9.0 270 < th dose dependent rect. 8 18
969 82.07 wind 7.0 270 < th dose independent rect. 9 17