BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0239000 Os12g0239000|AK101424
(1174 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G27850.1 | chr1:9699265-9703701 FORWARD LENGTH=1149 115 1e-25
AT2G40070.1 | chr2:16728378-16731160 REVERSE LENGTH=608 80 8e-15
AT3G08670.1 | chr3:2633946-2636536 FORWARD LENGTH=568 57 6e-08
AT3G09000.1 | chr3:2746014-2748326 FORWARD LENGTH=542 56 1e-07
>AT1G27850.1 | chr1:9699265-9703701 FORWARD LENGTH=1149
Length = 1148
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 87/129 (67%), Gaps = 7/129 (5%)
Query: 17 HRRGHSFGSTVPAKPKDDELALFNDMRKNEEDNFLLESSDNFDETIS-KLSYFPDLKLGV 75
HRRGHS + + KDD+LALF++M+ E D+FLL+SSD+ ++ S KL +F + + V
Sbjct: 20 HRRGHSIEYGILFRDKDDDLALFSEMQDKERDSFLLQSSDDLEDVFSTKLKHFSEFTIPV 79
Query: 76 NIARREESRDFLNTDGDKNDYDWLLTPPETPLFRSLDDDEDKLAGPAPRGRAQTKPILIS 135
+ ES L +GDKNDYDWLLTPP+TPLF SL DD+ A RGR Q++ I +S
Sbjct: 80 ----QGESSRLLTAEGDKNDYDWLLTPPDTPLFPSL-DDQPPAASVVRRGRPQSQ-ISLS 133
Query: 136 RSSTMENAQ 144
RSSTME ++
Sbjct: 134 RSSTMEKSR 142
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 98/190 (51%), Gaps = 5/190 (2%)
Query: 230 GTRGASPVKTNR-RSSSPKFQGWQSSDPGFSFDAPPNLRTSMXXXXXXXXXXXXXXXXXX 288
RG SPV ++R S SPK + WQS+ PGFS DAPPNLRTS+
Sbjct: 224 AVRGTSPVSSSRGNSPSPKIKVWQSNIPGFSLDAPPNLRTSLGDRPASYVRGSSPASRNG 283
Query: 289 XNMVSRGRRQSMSPTPSRRTISSHSTERDRFXXXXXXXXXXXGEDDLDSMQSVPIDYSSS 348
+ VS R+S+SP+ SR SSHS ERDRF G+DDL S+QS+P+ S
Sbjct: 284 RDAVSTRSRKSVSPSASRSVSSSHSHERDRFSSQSKGSVASSGDDDLHSLQSIPVGGSER 343
Query: 349 PAVKKSLAVMKTRTIAXXXXXXXXXXXXXXXXXXFDSAVWLMDHRKAPQSMFRPLLSSVP 408
K++ +RT F+SA+ M+H K+ SMFRPL SS+P
Sbjct: 344 AVSKRASLSPNSRT----SRSSKLLSPGSAPRRPFESALRQMEHPKSHHSMFRPLASSLP 399
Query: 409 TTTFVAGKGN 418
+T +GKG+
Sbjct: 400 STGIYSGKGS 409
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 13/137 (9%)
Query: 1048 RCFTLEEATDTILFCSSIVHDLAYKAATVGLEREQ----EAEFAHAPRPTVTMVEKFIPR 1103
R TLEEATDTILFCSSIVHDL Y+AAT+ +++ + E E H PTVT++ K
Sbjct: 1015 RSLTLEEATDTILFCSSIVHDLVYQAATIAMDKAKDVPAEEEMLH---PTVTVLGKSNAN 1071
Query: 1104 ED-----GLLRGPQRRTTRRKVERKIPEGDGESITDTARTEVITKEPAPVRSSSEITTFD 1158
+ G + +R + K RK E + ++ E + + +
Sbjct: 1072 RNSYGLGGGTKAKKRSSKAAKASRKQTETEEKTEVQIENDENAGEAVMMRNVGVPPSKGE 1131
Query: 1159 SLK-PPKMESKCNCTIM 1174
++K PP +ESKCNC+IM
Sbjct: 1132 NMKPPPNLESKCNCSIM 1148
>AT2G40070.1 | chr2:16728378-16731160 REVERSE LENGTH=608
Length = 607
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)
Query: 32 KDDELALFNDMRK--NEEDNFLLESS-DNFDETI-SKLSYFP--DLKLGVNIARREESRD 85
KD+EL+LF +MR+ E+DN LL ++ D F+ + SK P ++ G +R+ D
Sbjct: 31 KDEELSLFLEMRRREKEQDNLLLNNNPDEFETPLGSKHGTSPVFNISSGAPPSRKAAPDD 90
Query: 86 FLNTDGDKNDYDWLLTPPETPLFRSLD 112
FLN++GDKNDY+WLLTPP TPLF SL+
Sbjct: 91 FLNSEGDKNDYEWLLTPPGTPLFPSLE 117
>AT3G08670.1 | chr3:2633946-2636536 FORWARD LENGTH=568
Length = 567
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 33 DDELALFNDMRKNEEDNFLLESSDNFDETISKLSYFPDLKLGVNIARREESRDFLNTDGD 92
D+ L LF+ +R++ F L SSD + +KL L +G IA + + + +G
Sbjct: 42 DENLDLFSKIRRS----FPLASSDELPDVSAKLGR---LSVGSKIAPKGKDDLLSSAEGG 94
Query: 93 KNDYDWLLTPPETPLFRSLDDDEDKLAGP 121
KNDYDWLLTPP TPL +D LA P
Sbjct: 95 KNDYDWLLTPPGTPLG---NDSHSSLAAP 120
>AT3G09000.1 | chr3:2746014-2748326 FORWARD LENGTH=542
Length = 541
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 32 KDDELALFNDMRKNEED---NFLLESSDNFDETISKLSYFPDLKLGVN--------IARR 80
+D+EL+LF +MR+ E++ + LL SDN + + GV+ RR
Sbjct: 6 RDEELSLFLEMRRREKEHRADSLLTGSDNVSINATLTAAAAAALSGVSETASSQRYPLRR 65
Query: 81 EESRDFLNTDGDKNDYDWLLTPPETPLF 108
+ +FL ++ +K+DYDWLLTPP TP F
Sbjct: 66 TAAENFLYSENEKSDYDWLLTPPGTPQF 93
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 23,117,722
Number of extensions: 973223
Number of successful extensions: 2130
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2123
Number of HSP's successfully gapped: 7
Length of query: 1174
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1064
Effective length of database: 8,090,809
Effective search space: 8608620776
Effective search space used: 8608620776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 117 (49.7 bits)